SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
460

Sequence
UniProt P11467
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
MATH
zf-TRAF
zf-TRAF
zf-C3HC4_2

Model 3D Structure
Model information:
Modelled residue range: 139 to 204
Based on template: [ 2yuc ]  
Sequence Identity [%]: 26%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    139         IDSH LINCQYKFVT CSFKGCEKIL RMNSLESH-Q NECGFKLVTC
2yucA     1     gssg--ssgh lntcsfnvip cpn-rcpmkl srrdlpahlq hdcpkrrlkc
                                                                      
TARGET                                                                
2yucA                              ss s      sss        hh            


TARGET    182   DFCKRDDIKK KELETHYKTC PMV ------                      
2yucA     48    efcgc-dfsg eayeshegmc pqessgpssg                      
                                                                      
TARGET                   h hhh   h                                    
2yucA                    h hhh   h

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: aa38a3fff9960febe719b472327307d7 on BC2-cluster at Sat Aug 30 02:07:18 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>aa38a3fff9960febe719b472327307d7
*****************************************************************************
>2cr2A Evalue:2.4E-15 SeqID:22.143 Method:HHSEARCH Type:MODEL
-----------------------------------------------------***********************-
>2eodA Evalue:1.1E-09 SeqID:19.697 Method:HHSEARCH Type:MODEL
----------------------------***********--------------------------------------
>2yucA Evalue:4.8E-09 SeqID:26.866 Method:HHSEARCH Type:MODEL
-----------------------***********-------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2cr2A          320            453            HHSEARCH       BUILT          
2eodA          170            234            HHSEARCH       BUILT          
2yucA          139            204            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: aa38a3fff9960febe719b472327307d7 on gopt-41.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 02:12:21 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.