SWISS-MODEL Repository - Model Details

Model Overview
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1
1070

Sequence
UniProt P12252
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
PDEase_I

Model 3D Structure
Model information:
Modelled residue range: 552 to 586
Based on template: [ 3g45 ]  
Sequence Identity [%]: 77%
Model date: 2013-02-21
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (3g45): DIMER
Model: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: MG: 1, ZN: 1.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       SLKFKRML NKELSHFSES SRSGNQISEY ICSTFLD -- ----------
3g45A     247     snkfkrml nrelthlsem srsgnqvsey isntfldtsi srfgvntene
                                                                      
TARGET             hhhhhhh hhhhhhhhh    hhhhhhhh hhh                  
3g45A               hhhhhh hhhhhhhhh    hhhhhhhh hhh                 h


TARGET          ---------- ---------- ---------- ---------- ----------
3g45A     336   dhlakeledl nkwglnifnv agyshnrplt cimyaifqer dllktfriss
                                                                      
TARGET                                                                
3g45A           hhhhh   hh        hhh hhh    hhh hhhhhhhh    hhhhh   h


TARGET          ---------- ---------- ---------- ---------- ----------
3g45A     386   dtfitymmtl edhyhsdvay hnslhaadva qsthvllstp aldavftdle
                                                                      
TARGET                                                                
3g45A           hhhhhhhhhh hhh          hhhhhhhh hhhhhhh           hhh


TARGET          ---------- ---------- ---------- ---------- ----------
3g45A     436   ilaaifaaai hdvdhpgvsn qflintnsel almyndesvl enhhlavgfk
                                                                      
TARGET                                                                
3g45A           hhhhhhhhhh          h hhhhh   hh hhhh    hh hhhhhhhhhh


TARGET          ---------- ---------- ---------- ---------- ----------
3g45A     486   llqeehcdif mnltkkqrqt lrkmvidmvl atdmskhmsl ladlktmvet
                                                                      
TARGET                                                                
3g45A           hh             hhhhhh hhhhhhhhhh h      hhh hhhhhhhhh 


TARGET          ---------- ---------- ---------- ---------- ----------
3g45A     536   kkvtssgvll ldnytdriqv lrnmvhcadl snptkslely rqwtdrimee
                                                                      
TARGET                                                                
3g45A            sss   sss     hhhhhh hhhhhhhh    hh   hhhh hhhhhhhhhh


TARGET          ---------- ---------- ---------- ---------- ----------
3g45A     586   ffqqgdkere rgmeispmcd khtasveksq vgfidyivhp lwetwadlvq
                                                                      
TARGET                                                                
3g45A           hhhhhhhhhh h               hhhhh hhhhh   hh hhhhhhhh  


TARGET          ---------- ---------- ---                             
3g45A     636   pdaqdildtl ednrnwyqsm ipq                             
                                                                      
TARGET                                                                
3g45A              hhhhhhh hhhhhhhhh

Quality 


Template's ligands section 
Ligands in the template: MG: 1, ZN: 1. 
Ligands in the template that will be assessed: MG802, ZN801. 
Model's ligands section 
ZN801 
There are not residues in the model that match the ones that interact with the ligand in the template. 
Given the properties calculated previously, the ligand A.ZN801 will not be included in the final model. 
ZN801: conservation:False, RMSD:False, included: False 
 
MG802 
The ligand binds less than 3 template residues. 
Given the properties calculated previously, the ligand A.MG802 will not be included in the final model. 
MG802: conservation:False, RMSD:False, included: False 
 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 3g45 is annotated as DIMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 3g45.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 The quaternary structure can be assumed to be identical 
 To build the complex the following chains of the complex has been additionally identified: 3g45B  
 Unfortunately, we were not able to built the model as DIMER. 
 Thus, the model was built as single chain.

Template Selection 
 - Start SMR-Pipeline for:6a825e8153c92030919ff10fa3dc7dca on BC2-cluster at Thu Feb 21 09:06:40
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  2
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

FATAL - No A3m found

 - Run HHSearch to detect more templates...
FATAL - No templates found in HHSEARCH, strange
 - No template with C found
 - No template with D found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:2): model based on new templates
 - Send 2 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                          ***
 - Oligomeric modeling of 3g45A was not successful, fall back to monomeric modeling
 - building model based on 3g45A (552-586) was successful 
 -                                                  ************************
 - building model based on 3o0jA (661-982) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:6a825e8153c92030919ff10fa3dc7dca on BC2-cluster at Thu Feb 21 09:09:45
2013


Template Description
Match Chain SeqId

1xlz: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH FILAMINAST
Solved by: X-RAY, Resolution: 2.06A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-983 1xlzA 73%
[Model]
661-983 1xlzB 73%
[Model]

3o56: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B IN COMPLEHETEROCYCLE PYRAZOLOPYRIDINE INHIBITOR
Solved by: X-RAY, Resolution: 2.42A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-983 3o56A 73%
[Model]

3o57: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B IN COMPLEHETEROCYCLE PYRAZOLOPYRIDINE INHIBITOR
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-983 3o57A 73%
[Model]

1f0j: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B
Solved by: X-RAY, Resolution: 1.77A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-986 1f0jA 73%
[Model]
654-986 1f0jB 73%
[Model]

3ly2: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX COUMARIN-BASED INHIBITOR
Solved by: X-RAY, Resolution: 2.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-983 3ly2A 73%
[Model]
654-983 3ly2B 73%
[Model]
654-983 3ly2C 73%
[Model]
656-983 3ly2D 73%
[Model]
655-983 3ly2E 73%
[Model]
656-983 3ly2F 73%
[Model]
654-983 3ly2G 73%
[Model]
654-983 3ly2H 73%
[Model]

1ro6: CRYSTAL STRUCTURE OF PDE4B2B COMPLEXED WITH ROLIPRAM (R &
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-988 1ro6A 73%
[Model]
654-988 1ro6B 73%
[Model]

1xlx: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH CILOMILAST
Solved by: X-RAY, Resolution: 2.19A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-983 1xlxA 73%
[Model]
661-983 1xlxB 73%
[Model]

1xm4: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH PICLAMILAST
Solved by: X-RAY, Resolution: 2.31A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-983 1xm4A 73%
[Model]
661-983 1xm4B 73%
[Model]

1y2h: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH 1-(2-CHLORO-PHENYL)-3,5-DIMETHYL-1H-PYRAZOLE-4- CARBOXYLIC ACID ETHYL ESTER
Solved by: X-RAY, Resolution: 2.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-983 1y2hA 73%
[Model]
661-983 1y2hB 73%
[Model]

1tb5: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH AMP
Solved by: X-RAY, Resolution: 2.15A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-983 1tb5A 73%
[Model]
661-983 1tb5B 73%
[Model]

1ro9: CRYSTAL STRUCTURES OF THE CATALYTIC DOMAIN OF PHOSPHODIESTERASE 4B2B COMPLEXED WITH 8-BR-AMP
Solved by: X-RAY, Resolution: 2.13A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-986 1ro9A 73%
[Model]
654-986 1ro9B 73%
[Model]

1y2j: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH 3,5-DIMETHYL-1-(3-NITRO-PHENYL)-1H-PYRAZOLE-4- CARBOXYLIC ACID ETHYL ESTER
Solved by: X-RAY, Resolution: 2.55A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-983 1y2jA 73%
[Model]
661-983 1y2jB 73%
[Model]

1xmu: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH ROFLUMILAST
Solved by: X-RAY, Resolution: 2.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-983 1xmuA 72%
[Model]
661-983 1xmuB 73%
[Model]

3o0j: PDE4B IN COMPLEX WITH LIGAND AN2898
Solved by: X-RAY, Resolution: 1.95A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-982 3o0jA 73%
[Model]

1xot: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH VARDENAFIL
Solved by: X-RAY, Resolution: 2.34A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-983 1xotA 73%
[Model]
661-983 1xotB 73%
[Model]

1ror: CRYSTAL STRUCTURES OF THE CATALYTIC DOMAIN OF PHOSPHODIESTERASE 4B2B COMPLEXED WITH AMP
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-986 1rorA 73%
[Model]
654-986 1rorB 73%
[Model]

3gwt: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B IN COMPLEWITH A QUINOLINE INHIBITOR
Solved by: X-RAY, Resolution: 1.75A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-983 3gwtA 73%
[Model]

2qyl: CRYSTAL STRUCTURE OF PDE4B2B IN COMPLEX WITH INHIBITOR NPV
Solved by: X-RAY, Resolution: 1.95A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-983 2qylA 73%
[Model]

3frg: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B IN COMPLEWITH A QUINOLINE INHIBITOR
Solved by: X-RAY, Resolution: 1.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-983 3frgA 73%
[Model]

1xmy: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH (R)-ROLIPRAM
Solved by: X-RAY, Resolution: 2.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-983 1xmyA 73%
[Model]
661-983 1xmyB 73%
[Model]

3d3p: CRYSTAL STRUCTURE OF PDE4B CATALYTIC DOMAIN IN COMPLEX WITA PYRAZOLOPYRIDINE INHIBITOR
Solved by: X-RAY, Resolution: 1.75A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-983 3d3pA 73%
[Model]

1xn0: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH (R,S)-ROLIPRAM
Solved by: X-RAY, Resolution: 2.31A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-983 1xn0A 72%
[Model]
661-983 1xn0B 72%
[Model]

1xos: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH SILDENAFIL
Solved by: X-RAY, Resolution: 2.28A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-983 1xosA 72%
[Model]

1xm6: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH (R)-MESOPRAM
Solved by: X-RAY, Resolution: 1.92A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-983 1xm6A 72%
[Model]
661-983 1xm6B 72%
[Model]

3kkt: CRYSTAL STRUCTURE OF HUMAN PDE4B WITH 5-[3-[(1S,2S,4R)- BICYCLO[2.2.1]HEPT-2-YLOXY]-4-METHOXYP HENYL]TETRAHYDRO- 2(1H)-PYRIMIDINONE REVEALS ORDERING OF THE C-TERMINAL HELRESIDUES 502-509.
Solved by: X-RAY, Resolution: 2.48A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-994 3kktA 72%
[Model]
654-981 3kktB 72%
[Model]

3iad: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH BOUNDALLOSTERIC MODULATOR
Solved by: X-RAY, Resolution: 2.65A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

655-980 3iadA 71%
[Model]
660-983 3iadB 71%
[Model]
658-980 3iadC 71%
[Model]
660-983 3iadD 71%
[Model]

1tbb: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH ROLIPRAM
Solved by: X-RAY, Resolution: 1.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

660-983 1tbbA 71%
[Model]
660-983 1tbbB 71%
[Model]

1oyn: CRYSTAL STRUCTURE OF PDE4D2 IN COMPLEX WITH (R,S)-ROLIPRAM
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

651-983 1oynA 71%
[Model]
651-983 1oynD 71%
[Model]
658-983 1oynB 71%
[Model]
658-983 1oynC 71%
[Model]

1mkd: CRYSTAL STRUCTURE OF PDE4D CATALYTIC DOMAIN AND ZARDAVERINCOMPLEX
Solved by: X-RAY, Resolution: 2.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-985 1mkdJ 71%
[Model]
658-985 1mkdB 71%
[Model]
658-985 1mkdI 71%
[Model]
658-985 1mkdE 71%
[Model]
658-985 1mkdA 71%
[Model]
658-985 1mkdH 71%
[Model]
658-985 1mkdG 71%
[Model]
658-985 1mkdC 71%
[Model]
658-985 1mkdF 71%
[Model]
658-985 1mkdL 71%
[Model]
658-985 1mkdD 71%
[Model]
658-985 1mkdK 71%
[Model]

1xom: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH CILOMILAST
Solved by: X-RAY, Resolution: 1.55A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-983 1xomA 71%
[Model]
660-983 1xomB 71%
[Model]

3sl6: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 WITH C
Solved by: X-RAY, Resolution: 2.44A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

656-982 3sl6A 71%
[Model]
660-983 3sl6B 71%
[Model]
658-982 3sl6C 71%
[Model]
660-983 3sl6D 71%
[Model]

1y2e: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH 1-(4-AMINO-PHENYL)-3,5-DIMETHYL-1H-PYRAZOLE-4- CARBOXYLIC ACID ETHYL ESTER
Solved by: X-RAY, Resolution: 2.10A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-983 1y2eA 71%
[Model]
660-983 1y2eB 71%
[Model]

3v9b: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 WITH ([1-(3-CYCLOPROPYLMETHOXY-4-DIFLUOROMETHOXYPHENYL)-2-(1-OXYL)-ETHYL]-1H-PYRAZL-3-YL}PHENYL)ACETAMIDE
Solved by: X-RAY, Resolution: 2.10A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-983 3v9bA 71%
[Model]
658-983 3v9bB 71%
[Model]
660-983 3v9bC 71%
[Model]
660-983 3v9bD 71%
[Model]

1y2b: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH 3,5-DIMETHYL-1H-PYRAZOLE-4-CARBOXYLIC ACID ETHYL EST
Solved by: X-RAY, Resolution: 1.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-983 1y2bA 71%
[Model]
658-983 1y2bB 71%
[Model]

2qyn: CRYSTAL STRUCTURE OF PDE4D2 IN COMPLEX WITH INHIBITOR NPV
Solved by: X-RAY, Resolution: 1.57A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-983 2qynA 71%
[Model]
660-983 2qynB 71%
[Model]

1xon: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH PICLAMILAST
Solved by: X-RAY, Resolution: 1.72A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-983 1xonA 71%
[Model]
658-983 1xonB 71%
[Model]

2fm0: CRYSTAL STRUCTURE OF PDE4D IN COMPLEX WITH L-869298
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

651-983 2fm0D 71%
[Model]
651-983 2fm0A 71%
[Model]
658-983 2fm0C 71%
[Model]
658-983 2fm0B 71%
[Model]

3g58: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH D155988/PMNPQ
Solved by: X-RAY, Resolution: 2.05A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

651-983 3g58A 71%
[Model]
658-983 3g58B 71%
[Model]
658-983 3g58C 71%
[Model]
651-1005 3g58D 67%
[Model]

1zkn: STRUCTURE OF PDE4D2-IBMX
Solved by: X-RAY, Resolution: 2.10A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

651-983 1zknA 71%
[Model]
651-983 1zknD 71%
[Model]
655-983 1zknC 71%
[Model]
658-983 1zknB 71%
[Model]

1tb7: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH AMP
Solved by: X-RAY, Resolution: 1.63A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

660-983 1tb7A 71%
[Model]
658-983 1tb7B 71%
[Model]

3sl8: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 WITH C
Solved by: X-RAY, Resolution: 2.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

656-982 3sl8A 71%
[Model]
661-983 3sl8B 72%
[Model]
658-980 3sl8C 71%
[Model]
660-983 3sl8D 71%
[Model]

3sl5: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 COMPLECOMPOUND 10D
Solved by: X-RAY, Resolution: 2.65A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

655-982 3sl5A 71%
[Model]
660-983 3sl5B 71%
[Model]
658-982 3sl5C 71%
[Model]
660-983 3sl5D 71%
[Model]

3hmv: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B IN COMPLETETRAHYDROBENZOTHIOPHENE INHIBITOR
Solved by: X-RAY, Resolution: 2.23A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-996 3hmvA 71%
[Model]
654-996 3hmvB 71%
[Model]

3sl3: CRYSTAL STRUCTURE OF THE APO FORM OF THE CATALYTIC DOMAIN
Solved by: X-RAY, Resolution: 2.10A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

655-980 3sl3A 71%
[Model]
664-983 3sl3B 72%
[Model]
660-982 3sl3C 71%
[Model]
660-983 3sl3D 71%
[Model]

3g4l: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH ROFLUMILAST
Solved by: X-RAY, Resolution: 2.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

655-983 3g4lA 71%
[Model]
660-983 3g4lB 71%
[Model]
658-983 3g4lC 71%
[Model]
651-983 3g4lD 71%
[Model]

2pw3: STRUCTURE OF THE PDE4D-CAMP COMPLEX
Solved by: X-RAY, Resolution: 1.56A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-983 2pw3A 71%
[Model]
660-983 2pw3B 71%
[Model]

3sl4: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 WITH C
Solved by: X-RAY, Resolution: 1.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

655-983 3sl4A 71%
[Model]
660-983 3sl4B 71%
[Model]
658-982 3sl4C 71%
[Model]
660-983 3sl4D 71%
[Model]

1y2k: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH 3,5-DIMETHYL-1-(3-NITRO-PHENYL)-1H-PYRAZOLE-4- CARBOXYLIC ACID ETHYL ESTER
Solved by: X-RAY, Resolution: 1.36A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-983 1y2kA 71%
[Model]
658-983 1y2kB 71%
[Model]

1xoq: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH ROFLUMILAST
Solved by: X-RAY, Resolution: 1.83A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-983 1xoqA 71%
[Model]
658-983 1xoqB 71%
[Model]

1ptw: THE CRYSTAL STRUCTURE OF AMP-BOUND PDE4 SUGGESTS A MECHANISM FOR PHOSPHODIESTERASE CATALYSIS
Solved by: X-RAY, Resolution: 2.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

651-983 1ptwD 71%
[Model]
651-983 1ptwA 71%
[Model]
658-983 1ptwC 71%
[Model]
658-983 1ptwB 71%
[Model]

2fm5: CRYSTAL STRUCTURE OF PDE4D2 IN COMPLEX WITH INHIBITOR L- 869299
Solved by: X-RAY, Resolution: 2.03A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

651-983 2fm5A 71%
[Model]
651-983 2fm5D 71%
[Model]
658-983 2fm5C 71%
[Model]
658-983 2fm5B 71%
[Model]

3iak: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D (PDE4D) WIPAPAVERINE.
Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-980 3iakA 71%
[Model]

3g4i: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH D1558
Solved by: X-RAY, Resolution: 1.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-983 3g4iA 71%
[Model]
660-983 3g4iB 71%
[Model]
658-983 3g4iC 71%
[Model]
651-983 3g4iD 71%
[Model]

3g4k: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH ROLIPRAM
Solved by: X-RAY, Resolution: 1.95A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

654-983 3g4kA 71%
[Model]
660-983 3g4kB 71%
[Model]
658-983 3g4kC 71%
[Model]
652-983 3g4kD 71%
[Model]

1y2c: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH 3,5-DIMETHYL-1-PHENYL-1H-PYRAZOLE-4-CARBOXYLIC ACID ETHYL ESTER
Solved by: X-RAY, Resolution: 1.67A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-983 1y2cA 71%
[Model]
658-983 1y2cB 71%
[Model]

1y2d: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH 1-(4-METHOXY-PHENYL)-3,5-DIMETHYL-1H-PYRAZOLE-4- CARBOXYLIC ACID ETHYL ESTER
Solved by: X-RAY, Resolution: 1.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-983 1y2dA 71%
[Model]
658-983 1y2dB 71%
[Model]

3g4g: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH REGULATORY DOMAIN AND D155871
Solved by: X-RAY, Resolution: 2.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

661-983 3g4gA 72%
[Model]
661-983 3g4gB 71%
[Model]
661-983 3g4gC 72%
[Model]
661-983 3g4gD 72%
[Model]

1q9m: THREE DIMENSIONAL STRUCTURES OF PDE4D IN COMPLEX WITH ROLIPRAMS AND IMPLICATION ON INHIBITOR SELECTIVITY
Solved by: X-RAY, Resolution: 2.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

651-983 1q9mA 71%
[Model]
651-983 1q9mD 71%
[Model]
656-983 1q9mC 71%
[Model]
658-983 1q9mB 71%
[Model]

1xor: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH ZARDAVERINE
Solved by: X-RAY, Resolution: 1.54A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

660-983 1xorA 71%
[Model]
658-983 1xorB 71%
[Model]

3k4s: THE STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN PDE4D WITH (3-BUTOXY-4-METHOXYPHENYL)METHYL-2-IMIDAZOLIDONE
Solved by: X-RAY, Resolution: 2.05A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

658-983 3k4sA 71%
[Model]

3i8v: CRYSTAL STRUCTURE OF HUMAN PDE4A WITH 4-(3-BUTOXY-4- METHOXYPHENYL)METHYL-2-IMIDAZOLIDONE
Solved by: X-RAY, Resolution: 2.25A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

651-982 3i8vA 70%
[Model]
651-982 3i8vB 70%
[Model]

2qyk: CRYSTAL STRUCTURE OF PDE4A10 IN COMPLEX WITH INHIBITOR NPV
Solved by: X-RAY, Resolution: 2.10A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

651-982 2qykA 70%
[Model]
651-982 2qykB 70%
[Model]

3g45: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4B WITH REGULATORY DOMAIN AND D155988
Solved by: X-RAY, Resolution: 2.63A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

552-591 3g45B 70%
[Model]
643-983 3g45A 71%
[Model]
643-983 3g45B 71%
[Model]
552-586 3g45A 77%
[Model]

3tvx: THE STRUCTURE OF PDE4A WITH PENTOXIFYLLINE AT 2.84A RESOLU
Solved by: X-RAY, Resolution: 2.84A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

651-982 3tvxA 70%
[Model]
651-982 3tvxB 70%
[Model]

2qym: CRYSTAL STRUCTURE OF UNLIGANDED PDE4C2
Solved by: X-RAY, Resolution: 1.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

651-979 2qymA 60%
[Model]

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.