SWISS-MODEL Repository - Model Details

Model Overview
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1
895

Sequence
UniProt P13418
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Rhv
Rhv
CRPV_capsid
Dicistro_VP4

Model 3D Structure
Model information:
Modelled residue range: 636 to 895
Based on template: [ 1b35 ]  
Sequence Identity [%]: 98%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    636     VMGEDQQI PRNEAQHGVH PISIDTHRIS NNWSPQAMCI GEKIVSIRQL
1b35A     1       vmgedqqi prneaqhgvh pisidthris nnwspqamci gekvvsirql
                                                                      
TARGET                      hhhhh                   hhhh           hhh
1b35A                       hhhhh                   hhhh           hhh


TARGET    684   IKRFGIFGDA NTLQADGSSF VVAPFTVTSP TKTLTSTRNY TQFDYYYYLY
1b35A     49    ikrfgifgda ntlqadgssf vvapftvtsp tktltstrny tqfdyyyyly
                                                                      
TARGET          h   sss    sss     ss sss                    hhhhhhhss
1b35A           h   sss    sss     ss sss                    hhhhhhhss


TARGET    734   AFWRGSMRIK MVAETQDGTG TPRKKTNFTW FVRMFNSLQD SFNSLISTSS
1b35A     99    afwrgsmrik mvaetqdgtg tprkktnftw fvrmfnslqd sfnslistss
                                                                      
TARGET          ssss sssss ssssss        sss  ss sssss    h hhhhh     
1b35A           ssss sssss ssssss        sss  ss sssss    h hhhhh     


TARGET    784   SAVTTTVLPS GTINMGPSTQ VIDPTVEGLI EVEVPYYNIS HITPAVTIDD
1b35A     149   savtttvlps gtinmgpstq vidptvegli evevpyynis hitpavtidd
                                                                      
TARGET           sssss            sss ss       s ssss         sss     
1b35A            sssss            sss ss       s ssss         sss     


TARGET    834   GTPSMEDYLK GHSPPCLLTF SPRDSISATN HHITASFMRA PGDDFSFMYL
1b35A     199   gtpsmedylk ghsppclltf sprdsisatn hiitasfmra lgddfsfmyl
                                                                      
TARGET              hhhhhh       ssss sss         sssssssss ss   sssss
1b35A               hhhhhh       ssss sss         sssssssss ss   sssss


TARGET    884   LEVPPLVNVA RA                                         
1b35A     249   lgvpplvnva ra-                                        
                                                                      
TARGET          s                                                     
1b35A           s

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 542668b3bee2e44fa41906496799bb10 on BC2-cluster at Sun Aug 31 08:14:09 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  4 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>542668b3bee2e44fa41906496799bb10
**********************************************************************************
>1b35C Evalue:1.19716e-160 SeqID:96.099 Method:BLAST Type:MODEL
-------------------------------**************************-------------------------
>1b35A Evalue:3.44449e-141 SeqID:98.462 Method:BLAST Type:MODEL
----------------------------------------------------------************************
>1b35B Evalue:3.42678e-130 SeqID:97.034 Method:BLAST Type:MODEL
-*********************------------------------------------------------------------
>1b35D Evalue:1.38798e-24 SeqID:98.246 Method:BLAST Type:MODEL
--------------------------*****---------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1b35C          341            622            BLAST          BUILT          
1b35A          636            895            BLAST          BUILT          
1b35B          8              243            BLAST          BUILT          
1b35D          284            340            BLAST          BUILT          

FINISHED PIPELINE ON ID: 542668b3bee2e44fa41906496799bb10 on gopt-65.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 08:20:56 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.