SWISS-MODEL Repository - Model Details

Model Overview
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1
1939

Sequence
UniProt P13538
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Myosin_head
Myosin_tail_1
Myosin_N

Model 3D Structure
Model information:
Modelled residue range: 841 to 966
Based on template: [ 2fxo ]  
Sequence Identity [%]: 84%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    841      PLLKSAE SEKEMANMKE EFEKTKEELA KSEAKRKELE EKMVVLLQEK
2fxoA     65533  gsspllksae rekemasmke eftrlkeale ksearrkele ekmvsllqek
                                                                      
TARGET               hhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh
2fxoA             hhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh


TARGET    888   NDLQLQVQAE ADSLADAEER CDQLIKTKIQ LEAKIKEVTE RAEDEEEINA
2fxoA     885   ndlqlqvqae qdnladaeer cdqliknkiq leakvkemnk rledeeemna
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh
2fxoA           hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh


TARGET    938   ELTAKKRKLE DECSELKKDI DDLELTLAK                       
2fxoA     935   eltakkrkle decselkrdi ddleltlak-                      
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh hhhh                            
2fxoA           hhhhhhhhhh hhhhhhhhhh hhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 6612a8ebae7c60ddba3cb9048c5db0e1 on BC2-cluster at Sun Aug 31 02:51:09 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>6612a8ebae7c60ddba3cb9048c5db0e1
*********************************************************************************
>2mysA Evalue:0 SeqID:87.500 Method:BLAST Type:MODEL
**************************-********----------------------------------------------
>2fxoA Evalue:3.25131e-32 SeqID:84.921 Method:BLAST Type:MODEL
-----------------------------------*****-----------------------------------------
>1ciiA Evalue:1.8E-09 SeqID:13.390 Method:HHSEARCH Type:MODEL
--------------------------------------------------*******-*******----------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2mysA          5              844            BLAST          NOT BUILT      
2fxoA          841            966            BLAST          BUILT          
1ciiA          1199           1549           HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 6612a8ebae7c60ddba3cb9048c5db0e1 on gopt-78.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 03:07:11 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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