SWISS-MODEL Repository - Model Details

Model Overview
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1
1091

Sequence
UniProt P13590
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
fn3
fn3
I-set
I-set
I-set
I-set
I-set

Model 3D Structure
Model information:
Modelled residue range: 496 to 693
Based on template: [ 2vkw ]  
Sequence Identity [%]: 83%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    496     QADTPSSP SIDRVEPYSS TARVEFDEPE ATGGVPILKY KAEWRALGEG
2vkwA     496     qadtpssp sidqvepyss taqvqfdepe atggvpilky kaewravgee
                                                                      
TARGET                     ssssssss s sssssss           sss sssssss   
2vkwA                      ssssssss s sssssss           sss sssssss   


TARGET    544   EWHSRLYDAK EANVEGTITI SGLKPETTYS VRLSAVNGKG VGEISLPSDF
2vkwA     544   vwhskwydak easmegivti vglkpettya vrlaalngkg lgeisaasef
                                                                      
TARGET            sssssssh hhhhh  sss ss   sssss sssssss  s ss     sss
2vkwA             sssssssh hhhhh  sss ss   sssss sssssss  s ss     sss


TARGET    594   KTQPVREPSA PKLEGQMGED GNSIKVNVIK QDDGGSPIRH YLIKYKAKHS
2vkwA     594   ktqpvrepsa pklegqmged gnsikvnlik qddggspirh ylvryral-s
                                                                      
TARGET          sss         sssssss     sssssss          ss ssssssss  
2vkwA           sss         sssssss     sssssss          ss ssssssss  


TARGET    644   SEWKPEIRLP SGIDHVMLKS LDWNAEYEVY VIAENQQGKS KPAHYAFRTS
2vkwA     643   sewkpeirlp sgsdhvmlks ldwnaeyevy vvaenqqgks kaahfvfrta
                                                                      
TARGET                ssss s  sssss      sssssss sssss  sss   ssssssss
2vkwA                 ssss s  sssss      sssssss sssss  sss   ssssssss


TARGET                                                                
2vkwA           -                                                     
                                                                      
TARGET                                                                
2vkwA

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: f9a9767b396b02ccbbd535d499f52a09 on BC2-cluster at Sun Aug 31 07:20:47 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  3 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>f9a9767b396b02ccbbd535d499f52a09
******************************************************************************
>1ie5A Evalue:9.83128e-52 SeqID:100.000 Method:BLAST Type:PDB
--------------********--------------------------------------------------------
>2vkwA Evalue:4.90554e-90 SeqID:83.838 Method:BLAST Type:MODEL
-----------------------------------***************----------------------------
>1qz1A Evalue:4.87404e-141 SeqID:87.847 Method:BLAST Type:MODEL
-*********************--------------------------------------------------------
>2e9wA Evalue:0 SeqID:17.842 Method:HHSEARCH Type:MODEL
--**-******************************-------------------------------------------
>2d9qB Evalue:1.2E-19 SeqID:12.766 Method:HHSEARCH Type:MODEL
------------------------------*******************-----------------------------
>1n26A Evalue:2E-19 SeqID:12.861 Method:HHSEARCH Type:MODEL
----------------******-**------************-----------------------------------
>3duhA Evalue:2E-13 SeqID:11.892 Method:HHSEARCH Type:MODEL
-----------------------**-*******-*-*---*********-----------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1ie5A          202            307            BLAST          PDB            
2vkwA          496            693            BLAST          BUILT          
1qz1A          20             307            BLAST          BUILT          
2e9wA          29             492            HHSEARCH       NOT BUILT      
2d9qB          417            686            HHSEARCH       NOT BUILT      
1n26A          224            595            HHSEARCH       NOT BUILT      
3duhA          322            685            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: f9a9767b396b02ccbbd535d499f52a09 on gopt-36.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 07:39:54 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.