SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
1091

Sequence
UniProt P13590
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
fn3
fn3
I-set
I-set
I-set
I-set
I-set

Model 3D Structure
Model information:
Modelled residue range: 20 to 307
Based on template: [ 1qz1 ]  
Sequence Identity [%]: 87%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    20       LQVDIVP SQGEISVGES KFFLCQVAGE AKYKDISWFS PNGEKLTPNQ
1qz1A     65535  v--lqvdivp sqgeisvges kfflcqvagd akdkdiswfs pngeklspnq
                                                                      
TARGET              sssss    sssss    ssssssss       ssssss    sss    
1qz1A               sssss    sssss    ssssssss       ssssss    sss    


TARGET    67    QRISVVRNDD FSSTLTIYNA NIDDAGIYKC VVSSVEEGDS EATVNVKIFQ
1qz1A     48    qrisvvwndd dsstltiyna niddagiykc vvtaedgtqs eatvnvkifq
                                                                      
TARGET           sssssss   ssssssss        sssss ssss   sss sssssssss 
1qz1A            sssssss   ssssssss        sssss ssss   sss sssssssss 


TARGET    117   KLMFKNAPTP QEFKEGDDAV IVCDVVSSLP PTIIWKHKGR DVMLKKDVRF
1qz1A     98    klmfknaptp qefkegedav ivcdvvsslp ptiiwkhkgr dvilkkdvrf
                                                                      
TARGET            sss      sssss   ss s  sss      sssss       hh    ss
1qz1A             sss      sssss   ss s  sss      sssss       hh    ss


TARGET    167   IVLSNNYLQI RGIKKTDEGT YRCEGRILAR GEINFKDIQV IVNVPPSVRA
1qz1A     148   ivlsnnylqi rgikktdegt yrcegrilar geinfkdiqv ivnvpptvqa
                                                                      
TARGET          sss   ssss s       ss ssssssss   ssssssssss sss   ssss
1qz1A           sss   ssss s       ss ssssssss   ssssssssss sss   ssss


TARGET    217   RQSTMNATAN LSQSVTLACD ADGFPEPTMT WTKDGEPIEQ EDNEEKYSFN
1qz1A     198   rqsivnatan lgqsvtlvcd adgfpeptms wtkdgepien ed-dekhifs
                                                                      
TARGET          s sssssss     sssssss ss     sss ssss sss        sssss
1qz1A           s sssssss     sssssss ss     sss ssss sss        sssss


TARGET    267   YDGSELIIKK VDKSDEAEYI CIAENKAGEQ DATIHLKVFA K         
1qz1A     249   ddsseltirn vdkndeaeyv ciaenkageq dasihlkvfa k-        
                                                                      
TARGET             ssssss        ssss sssss  sss sssssssss            
1qz1A              ssssss        ssss sssss  sss sssssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: f9a9767b396b02ccbbd535d499f52a09 on BC2-cluster at Sun Aug 31 07:20:47 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  3 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>f9a9767b396b02ccbbd535d499f52a09
******************************************************************************
>1ie5A Evalue:9.83128e-52 SeqID:100.000 Method:BLAST Type:PDB
--------------********--------------------------------------------------------
>2vkwA Evalue:4.90554e-90 SeqID:83.838 Method:BLAST Type:MODEL
-----------------------------------***************----------------------------
>1qz1A Evalue:4.87404e-141 SeqID:87.847 Method:BLAST Type:MODEL
-*********************--------------------------------------------------------
>2e9wA Evalue:0 SeqID:17.842 Method:HHSEARCH Type:MODEL
--**-******************************-------------------------------------------
>2d9qB Evalue:1.2E-19 SeqID:12.766 Method:HHSEARCH Type:MODEL
------------------------------*******************-----------------------------
>1n26A Evalue:2E-19 SeqID:12.861 Method:HHSEARCH Type:MODEL
----------------******-**------************-----------------------------------
>3duhA Evalue:2E-13 SeqID:11.892 Method:HHSEARCH Type:MODEL
-----------------------**-*******-*-*---*********-----------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1ie5A          202            307            BLAST          PDB            
2vkwA          496            693            BLAST          BUILT          
1qz1A          20             307            BLAST          BUILT          
2e9wA          29             492            HHSEARCH       NOT BUILT      
2d9qB          417            686            HHSEARCH       NOT BUILT      
1n26A          224            595            HHSEARCH       NOT BUILT      
3duhA          322            685            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: f9a9767b396b02ccbbd535d499f52a09 on gopt-36.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 07:39:54 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.