SWISS-MODEL Repository - Model Details

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1
809

Sequence
UniProt P16258
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
PH
Oxysterol_BP

Model 3D Structure
Model information:
Modelled residue range: 89 to 188
Based on template: [ 2d9x ]  
Sequence Identity [%]: 34%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    89           SGS AREGWLFKWT NYIKGYQRRW FVLSN--GLL SYYRSKAEMR
2d9xA     1     gssgs--sge nvygylmkyt nlvtgwqyrf fvlnneagll eyfvneqsrn
                                                                      
TARGET                      sssssssss     ssssss sss                  
2d9xA                       sssssssss     ssssss sss                  


TARGET    130   HTCRGTINLA TANITVE--D SCNFIISNGG AQTYHLKASS EVERQRWVTA
2d9xA     49    qkprgtlqla gavispsded shtftvnaas geqyklratd akerqhwvsr
                                                                      
TARGET                     sssss          sssss   sss       hhhhhhhhhh
2d9xA                      sssss          sssss   sss       hhhhhhhhhh


TARGET    178   LELAKAKAVK M -------- --                              
2d9xA     99    lqictqhhte aigknnsgps sg                              
                                                                      
TARGET          hhhhhhhhhh h                                          
2d9xA           hhhhhhhhhh h

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: ac9c858a7004a0394316cc39960daad4 on BC2-cluster at Sun Aug 31 01:52:29 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>ac9c858a7004a0394316cc39960daad4
*********************************************************************************
>1zhtA Evalue:0 SeqID:18.750 Method:HHSEARCH Type:MODEL
------------------------------------------************************--**-*****-*---
>2d9xA Evalue:1.1E-16 SeqID:34.615 Method:HHSEARCH Type:MODEL
---------**********--------------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1zhtA          418            776            HHSEARCH       NOT BUILT      
2d9xA          89             188            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: ac9c858a7004a0394316cc39960daad4 on gopt-61.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 01:58:25 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.