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SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Link to: [ InterPro ]
Model 3D Structure
Alignment
TARGET 1 GFTFA KHSQTTAVPQ CPPGASQLWE GYSLLYVQGN GRASGQDLGQ
1t60G 2 vdh--gflvt rhsqttddpq cppgtkilyh gysllyvqgn erahgqdlgt
TARGET ssss sss sssss sssssssss sssss
1t60G ssss sss sssss sssssssss sssss
TARGET 46 PGSCLSKFNT MPFMFCNMNS VCHVSSRNDY SFWLSTDEPM TPMMNPVTGT
1t60G 50 agsclrkfst mpflfcninn vcnfasrndy sywlstpepm pmsmapitge
TARGET sss sss sss ss ssssss
1t60G sss sss sss ss ssssss
TARGET 96 AIRPYISRCA VCEVPTQIIA VHSQDTSVPQ CPQGWSGMWT GYSFVMHTAA
1t60G 100 nirpfisrca vceapamvma vhsqtiqipq cptgwsslwi gysfvmhtsa
TARGET hhhhssssss ssss ssss sss sssssss sssssssss
1t60G hhhhssssss ssss ssss sss sssssss sssssssss
TARGET 146 GAEGTGQSLQ SPGSCLEEFR AVPFIECHGR GTCNYYATNH GFWLSIVDQD
1t60G 150 gaegsgqala spgscleefr sapfiechgr gtcnyyanay sfwlatiers
TARGET sssss sss sssssss sss s ssssss hh
1t60G sssss sss sssssss sss s ssssss hh
TARGET 196 KQFRKPMSQT LKAGGLKDRV SRCQVCLK -
1t60G 200 emfkkptpst lkagelrthv srcqvcmrrt
TARGET h ss ssssssss
1t60G h ss sssssssss
Template Selection
- Start SMR-Pipeline for:09a5c0744a2e2605f2bb1309fff072e8 on BC2-cluster at Wed Feb 20 12:34:55
2013
- Analyze BLAST summary ...
- Blast template search was successfull, number of templates selected for modeling: 1
- But still uncovered regions of the target sequence detected, go for: HHSEARCH
- Run HHSearch to detect more templates...
FATAL - No templates found in HHSEARCH, strange
- No template with C found
- No template with F found
- No template with I found
- No template with L found
- No template with C found
- No template with F found
- No template with C found
- No template with F found
- No template with I found
- No template with L found
- No template with O found
- No template with R found
- No template with U found
- No template with X found
- No template with C found
- No template with F found
- No template with G found
- No template with H found
- No template with I found
- No template with J found
- No template with K found
- Warning: Oligomer Prediction was not successfull!
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:1): model based on new templates
- Send 1 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- **********
- building model based on 1t60G (1535-1757) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:09a5c0744a2e2605f2bb1309fff072e8 on BC2-cluster at Wed Feb 20 12:37:21
2013
Template Search
Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles: - Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009). The SWISS-MODEL Repository and associated resources. Nucleic Acids Res. 37, D387-D392. - Jürgen Kopp and Torsten Schwede (2004) The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models. Nucleic Acids Res. 32, D230-D234. |
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