SWISS-MODEL Repository - Model Details

Model Overview
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1
245

Sequence
UniProt P17435
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
LRV
LRV
LRV_FeS

Model 3D Structure
Model information:
Modelled residue range: 16 to 240
Based on template: [ 1lrv ]  
Sequence Identity [%]: 36%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    16          ECGA CRFQ-DLLES GHCGLGWSCL NDRYAKRIER FFLLNPELAD
1lrvA     9     tpig--dcrv csfrmslllt grctpgdacv avesgrqidr ffrnnphlav
                                                                      
TARGET                                               hhhhhh hhh   hhhh
1lrvA                        hh                      hhhhhh hhh   hhhh


TARGET    59    ENLGHPYFET RVQAARTASV FRLPRLLADE DPAVRGMAVL RLPAAHAERL
1lrvA     57    qyladpfwer raiavryspv ealtplirds devvrravay rlpreqlsal
                                                                      
TARGET          hh     hhh hhhhh         hhh      hhhhhhhh         hhh
1lrvA           hh     hhh hhhhh      hhhhhh      hhhhhhhh         hhh


TARGET    109   IRDPDRAVRI AVAHRLPPGG LLPMLQDKDG HVRLIVARRA ETGMLPMLCA
1lrvA     107   mfdedrevri tvadrlpleq leqmaadrdy lvrayvvqri ppgrlfrfmr
                                                                      
TARGET               hhhhh hhhhh      hhhh     h hhhhhhhhh       hhh  
1lrvA                hhhhh hhhhh      hhhh     h hhhhhhhhh            


TARGET    159   DPDPEVRAEV ARRIDPAFLD RFRTDPEPLV RRVAARRR-- --PGLFVADD
1lrvA     157   dedrqvrklv akrlpeeslg lmtqdpepev rrivasrlrg ddllellhdp
                                                                      
TARGET             hhhhhhh hh   h   h hh     hhh hhhhh                
1lrvA              hhhhhhh hh   h   h hh     hhh hhhhhhh     hhhhh    


TARGET    205   DLRVRHTVAE EGGREELRRL VSDPEDIIRE TAIQRL               
1lrvA     207   dwtvrlaave hasleal-re ldepdpevrl aiagrl-              
                                                                      
TARGET           hhhhhhhh     hhhhh        hhhhh hhh                  
1lrvA            hhhhhhhh     hhhh hh      hhhhh hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 2f7884d4d3a96c7d673bf38f593252fe on BC2-cluster at Wed Sep  3 15:59:04 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>2f7884d4d3a96c7d673bf38f593252fe
**********************************************************************************
>1lrvA Evalue:0 SeqID:36.957 Method:HHSEARCH Type:MODEL
-----***************************************************************************--


TEMPLATE ID    START          STOP           METHOD         STATUS         
1lrvA          16             240            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 2f7884d4d3a96c7d673bf38f593252fe on gopt-65.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 16:01:02 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.