SWISS-MODEL Repository - Model Details

Model Overview
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1
482

Sequence
UniProt P17453
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
LBP_BPI_CETP
LBP_BPI_CETP_C

Model 3D Structure
Model information:
Modelled residue range: 28 to 481
Based on template: [ 1bp1 ]  
Sequence Identity [%]: 63%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    28       NPGIVAR ITQKGLDYAC QQGVLTLQKE LEKITIPNFS GNFKIKYLGK
1bp1A     1     v--npgvvvr isqkgldyas qqgtaalqke lkrikipdys dsfkikhlgk
                                                                      
TARGET               sssss sshhhhhhhh hhhhhhhhhh h       ss sssss   ss
1bp1A                sssss sshhhhhhhh hhhhhhhhhh h       ss sssss   ss


TARGET    75    GQYSFFSMVI QGFNLPNSQI RPLPDKGLDL SIRDASIKIR GKWKARKNFI
1bp1A     49    ghysfysmdi refqlpssqi smvpnvglkf sisnanikis gkwkaqkrfl
                                                                      
TARGET          ssssss  ss ssss    ss sss   ssss ss  ssssss sssssss  s
1bp1A           ssssss  ss ssss    ss sss   ssss ss  ssssss sssssss  s


TARGET    125   KLGGNFDLSV EGISILAGLN LGYDPASGHS TVTCSSCSSG INTVRIHISG
1bp1A     99    kmsgnfdlsi egmsisadlk lgsnptsgkp titcsscssh insvhvhisk
                                                                      
TARGET          ssssssssss ss sssssss ssss    ss ssssssssss     sss   
1bp1A           ssssssssss ss sssssss ssss    ss ssssssssss     sss   


TARGET    175   SSLGWLIQLF RKRIESLLQK SMTRKICEVV TSTVSSKLQP YFQTLPVTTK
1bp1A     149   skvgwliqlf hkkiesalrn kmnsqvcekv tnsvssklqp yfqtlpvmtk
                                                                      
TARGET              hhhhhh h   hhhhhh hhhhhhhhhh hhhhh   hh       ssss
1bp1A               hhhhhh h   hhhhhh hhhhhhhhhh hhhhh   hh       ssss


TARGET    225   LDKVAGVDYS LVAPPRATAN NLDWLLKGEF FSLAHRSPPP FAPPALAFPS
1bp1A     199   idsvaginyg lvappattae tldvqmkgef ysenhhnppp fappvmefpa
                                                                      
TARGET          s   ssssss ss   sss   ssssssssss s                    
1bp1A           s   ssssss ss   sss   ssssssssss s                    


TARGET    275   DHDRMVYLGI SEYFFNTAGF VYQKAGALNL TLRDDMIPKE SKFRLTTKFF
1bp1A     249   ahdrmvylgl sdyffntagl vyqeagvlkm tlrddmipke skfrlttkff
                                                                      
TARGET              ssssss sshhhhhhhh hhhh   sss ss             ssshhh
1bp1A               ssssss sshhhhhhhh hhhh   sss ss             ssshhh


TARGET    325   GILIPQVAKM FPDMQMQLFI WASLPPKLTM KPSGLDLIFV LDTQAFAILP
1bp1A     299   gtflpevakk fpnmkiqihv sastpphlsv qptgltfypa vdvqafavlp
                                                                      
TARGET          h     hhhh    sssssss sss   ssss s  sssssss sssssssss 
1bp1A           h     hhhh    sssssss sss   ssss s  sssssss sssssssss 


TARGET    375   NSSLDPLFLL EMNLNLSVVV GAKSDRLIGE LRLDKLLLEL KHSDIGPFSV
1bp1A     349   nsalaslfli gmhttgsmev saesnrlvge lkldrlllel khsnigpfpv
                                                                      
TARGET            ssssssss ssssssssss sss ssssss ss    ssss ssss      
1bp1A             ssssssss ssssssssss sss ssssss ssss  ssss ssss      


TARGET    425   ESLQSVINYV MPTIVLPVIN KKLQKGFPLP LPAYIELFNL TLQPYQDFLL
1bp1A     399   ellqdimnyi vpilvlprvn eklqkgfplp tparvqlynv vlqphqnfll
                                                                      
TARGET          h   hh   h hhhhhhhhhh hhhhh sss     sssss   sssss ssss
1bp1A           h   hh   h hhhhhhhhhh hhhhh sss     sssss   sssss ssss


TARGET    475   FGADVHY                                               
1bp1A     449   fgadvvyk                                              
                                                                      
TARGET          sssssss                                               
1bp1A           ssssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 1b97ad5a483d768eddc0c7d89ab67fd6 on BC2-cluster at Fri Aug 29 19:02:33 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>1b97ad5a483d768eddc0c7d89ab67fd6
*********************************************************************************
>1bp1A Evalue:3.26111e-166 SeqID:63.656 Method:BLAST Type:MODEL
----*****************************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1bp1A          28             481            BLAST          BUILT          

FINISHED PIPELINE ON ID: 1b97ad5a483d768eddc0c7d89ab67fd6 on gopt-54.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 19:03:10 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.