SWISS-MODEL Repository 
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Link to: [ InterPro ]
| ADH_zinc_N | |
| ketoacyl-synt | |
| PP-binding | |
| Acyl_transf_1 | |
| Thioesterase | |
| Ketoacyl-synt_C | |
| Methyltransf_12 | |
| KR |
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] |
Alignment
TARGET 1 EEVVIAG MSGKLPESEN LQEFWANLIG GVDMVTDDDR RWKAGLYGLP
3hhd_2#2 1 g--eevviag msgklpesen lqefwdnlig gvdmvtdddr rwkaglyglp
TARGET ssssss ssss hhhhhhhhhh
3hhd_2#2 ssssss ssss hhhhhhhhhh
TARGET 48 KRSGKLKDLS KFDASFFGVH PKQAHTMDPQ LRLLLEVSYE AIVDGGINPA
3hhd_2#2 49 rrsgklkdls rfdasffgvh pkqahtmdpq lrlllevtye aivdgginpd
TARGET hhh hhhh hh hhhhhhhhhh hhhh h
3hhd_2#2 hhh hhhh hh hhhhhhhhhh hhhh h
TARGET 98 SLRGTNTGVW VGVSGSEASE ALSRDPETLL GYSMVGCQRA MMANRLSFFF
3hhd_2#2 99 slrgthtgvw vgvsgsetse alsrdpetlv gysmvgcqra mmanrlsfff
TARGET h sss sss hhhh hhh hhhhh h hhhhhhhhhh
3hhd_2#2 h sss sss hhh hhh hhhhh h hhhhhhhhhh
TARGET 148 DFKGPSIALD TACSSSLLAL QNAYQAIRSG ECPAALVGGI NLLLKPNTSV
3hhd_2#2 149 dfrgpsiald tacssslmal qnayqaihsg qcpaaivggi nvllkpntsv
TARGET ssssss hhh h hhhhhhhh ssssssss s hhhh
3hhd_2#2 ssssss hhhhhhh hhhhhhhh ssssssss s hhhh
TARGET 198 QFMKLGMLSP DGTCRSFDDS GSGYCRSEAV VAVLLTKKSL ARRVYATILN
3hhd_2#2 199 qflrlgmlsp egtckafdta gngycrsegv vavlltkksl arrvyatiln
TARGET hhhhh sss ss ssssssss ssssss
3hhd_2#2 hhhhh sss ss ssssssss ssssss
TARGET 248 AGTNTDGSKE QGVTFPSGEV QEQLICSLYQ PAGLAPESLE YIEAHGTGTK
3hhd_2#2 249 agtntdgfke qgvtfpsgdi qeqlirslyq sagvapesfe yieahgtgtk
TARGET ssssss hhh hhhhhhhhhh hh s ssss h
3hhd_2#2 ssssss hhh hhhhhhhhhh hh s ssss h
TARGET 298 VGDPQELNGI TRSLCAFRQA PLLIGSTKSN MGHPEPASGL AALTKVLLSL
3hhd_2#2 299 vgdpqelngi tralcatrqe plligstksn mghpepasgl aalakvllsl
TARGET hhhhhhhhhh hhh ssss hhh hhhh hhhhhhhhhh
3hhd_2#2 hhhhhhhhhh hhh ssss hhh hhhh hhhhhhhhhh
TARGET 348 EHGVWAPNLH FHNPNPEIPA LLDGRLQVVD RPLPVRGGNV GINSFGFGGS
3hhd_2#2 349 ehglwapnlh fhspnpeipa lldgrlqvvd qplpvrggnv ginsfgfggs
TARGET hhsss sss h hhh sssss sss s ssssss ss
3hhd_2#2 hhsss sss h hhh sssss sss s ssssss ss
TARGET 398 NVHVILQPNT RQAPAPTAHA ALPHLLHASG RTLEAVQDLL EQGRQHSQDL
3hhd_2#2 399 nvhiilrpnt qpppapapha tlprllrasg rtpeavqkll eqglrhsqdl
TARGET sssssssss hh sssssss hhhhhhhh hhhhh h
3hhd_2#2 sssssssss hh sssssss hhhhhhhh hhhhh h
TARGET 448 AFVSMLNDIA ATPTAAMPFR GYTVLGVEGR VQEVQQVSTN KRPLWFICSG
3hhd_2#2 449 aflsmlndia avpatampfr gyavlggerg gpevqqvpag erplwficsg
TARGET hhhhhhhhh sss sssss sssss ssssssss
3hhd_2#2 hhhhhhhhh sss sssss sssss sssssss
TARGET 498 MGTQWRGMGL SLMRLDSFRE SILRSDEAVK PLGVKVSDLL LSTDERTFDD
3hhd_2#2 499 mgtqwrgmgl slmrldrfrd silrsdeavk pfglkvsqll lstdestfdd
TARGET h hhh hhhh hhhhhhh hhhhh h h h
3hhd_2#2 h hhh hhhh hhhhhhh hhhhh h h h
TARGET 548 IVHAFVSLTA IQIALIDLLT SVGLKPDGII GHSLGEVACG YADGCLSQRE
3hhd_2#2 549 ivhsfvslta iqiglidlls cmglrpdgiv ghslgevacg yadgclsqee
TARGET hhhhhhhhhh hhhhhhhhhh h sss ss hhhhhh hhh hhh
3hhd_2#2 hhhhhhhhhh hhhhhhhhhh h sss ss hhhhhh hhh hhh
TARGET 598 AVLAAYWRGQ CIKDAHLPPG SMAAVGLSWE ECKQRCPAGV VPACHNSEDT
3hhd_2#2 599 avlaaywrgq cikeahlppg amaavglswe eckqrcppgv vpachnskdt
TARGET hhhhhhhhhh hhh ss ssssss hh hhhhh sssss
3hhd_2#2 hhhhhhhhhh hhh ss ssssss hh hhhhh sssss
TARGET 648 VTISGPQAAV NEFVEQLKQE GVFAKEVRTG GLAFHSYFME GIAPTLLQAL
3hhd_2#2 649 vtisgpqapv fefveqlrke gvfakevrtg gmafhsyfme aiappllqel
TARGET ssssssshhh hhhhhhhhhh sssss hhh hhhhhhhhhh
3hhd_2#2 ssssssshhh hhhhhhhhhh sssss hhh hhhhhhhhhh
TARGET 698 KKVIREPRPR SARWLSTSIP EAQWQSSLAR TSSAEYNVNN LVSPVLFQEA
3hhd_2#2 699 kkvirepkpr sarwlstsip eaqwhsslar tssaeynvnn lvspvlfqea
TARGET hhh sss hhhs ss hhhhhhh hh ssshhh
3hhd_2#2 hhh sss hhs ss hhhhhhh hh ssshhh
TARGET 748 LWHIPEHAVV LEIAPHALLQ AVLKRGVKSS CTIIPLMKRD HKDNLEFFLT
3hhd_2#2 749 lwhvpehavv leiaphallq avlkrglkps ctiiplmkkd hrdnleffla
TARGET hh sss sss hh hhhhhh sss hhhhhhh
3hhd_2#2 hh sss sss hh hhhhhh sss hhhhhhh
TARGET 798 NLGKVHLTGI NVNPNALFPP VEFPAPRGTP LISPHIKWDH SQTWDVPVAE
3hhd_2#2 799 gigrlhlsgi danpnalfpp vefpaprgtp lisplikwdh slawdvpaae
TARGET hhhhhhhh hh
3hhd_2#2 hhhhhhh hh
TARGET 848 DFPN ---- EEVVIAGMSG KLPESENLQE FWANLIGGVD MVTDDDRRWK
3hhd_2#2 849 dfpn-stg-- eevviagmsg klpesenlqe fwdnliggvd mvtdddrrwk
*
TARGET sssssssss s hhh hhhhhhh
3hhd_2#2 sssssssss s hhh hhhhhhh
TARGET 892 AGLYGLPKRS GKLKDLSKFD ASFFGVHPKQ AHTMDPQLRL LLEVSYEAIV
3hhd_2#2 42 aglyglprrs gklkdlsrfd asffgvhpkq ahtmdpqlrl llevtyeaiv
TARGET hhh hhh h hhhhh hhhhhhhhhh
3hhd_2#2 hhh hhh h hhhhh hhhhhhhhhh
TARGET 942 DGGINPASLR GTNTGVWVGV SGSEASEALS RDPETLLGYS MVGCQRAMMA
3hhd_2#2 92 dgginpdslr gthtgvwvgv sgsetseals rdpetlvgys mvgcqramma
TARGET h hh ssssss hhhhhh hh hhh hhhh
3hhd_2#2 h hh ssssss hhhhhhh hh hhh hhhh
TARGET 992 NRLSFFFDFK GPSIALDTAC SSSLLALQNA YQAIRSGECP AALVGGINLL
3hhd_2#2 142 nrlsfffdfr gpsialdtac ssslmalqna yqaihsgqcp aaivgginvl
TARGET hhhhhhh ssssss hhhhhhhhh hhhhh s ssssssss
3hhd_2#2 hhhhhhh ssssss hhhhhhhhhh hhhhh s ssssssss
TARGET 1042 LKPNTSVQFM KLGMLSPDGT CRSFDDSGSG YCRSEAVVAV LLTKKSLARR
3hhd_2#2 192 lkpntsvqfl rlgmlspegt ckafdtagng ycrsegvvav lltkkslarr
TARGET hhhhhhh hh sss sssss sssss
3hhd_2#2 hhhhhhh hh sss sssss sssss
TARGET 1092 VYATILNAGT NTDGSKEQGV TFPSGEVQEQ LICSLYQPAG LAPESLEYIE
3hhd_2#2 242 vyatilnagt ntdgfkeqgv tfpsgdiqeq lirslyqsag vapesfeyie
TARGET sssssssss sss hhhhhh hhhhhhhhh ssss
3hhd_2#2 sssssssss sss hhhhhh hhhhhhhhh ssss
TARGET 1142 AHGTGTKVGD PQELNGITRS LCAFRQAPLL IGSTKSNMGH PEPASGLAAL
3hhd_2#2 292 ahgtgtkvgd pqelngitra lcatrqepll igstksnmgh pepasglaal
TARGET s hhhh hhhhhhhhhh ss ss hhh hhhhhhh
3hhd_2#2 s hhhh hhhhhhhhhh ss ss hhh hhhhhhh
TARGET 1192 TKVLLSLEHG VWAPNLHFHN PNPEIPALLD GRLQVVDRPL PVRGGNVGIN
3hhd_2#2 342 akvllslehg lwapnlhfhs pnpeipalld grlqvvdqpl pvrggnvgin
TARGET hhhhhhhhhs ss s ss hhhh sssss s ss ssss
3hhd_2#2 hhhhhhhhhs ss s ss hhhh sssss s ss ssss
TARGET 1242 SFGFGGSNVH VILQPNTRQA PAPTAHAALP HLLHASGRTL EAVQDLLEQG
3hhd_2#2 392 sfgfggsnvh iilrpntqpp papaphatlp rllrasgrtp eavqklleqg
TARGET sss sssss ssssss hh sssssss h hhhhhhhhhh
3hhd_2#2 sss sssss ssssss hh sssssss h hhhhhhhhhh
TARGET 1292 RQHSQDLAFV SMLNDIAATP TAAMPFRGYT VLGVEGRVQE VQQVSTNKRP
3hhd_2#2 442 lrhsqdlafl smlndiaavp atampfrgya vlggerggpe vqqvpagerp
TARGET hh hhhh hhhhhh ssssss ss s ssss s
3hhd_2#2 hh hhhh hhhhhh ssssss ss s ssss s
TARGET 1342 LWFICSGMGT QWRGMGLSLM RLDSFRESIL RSDEAVKPLG VKVSDLLLST
3hhd_2#2 492 lwficsgmgt qwrgmglslm rldrfrdsil rsdeavkpfg lkvsqlllst
TARGET sssss hhhh hhhhhhh hhhh hhhhhh
3hhd_2#2 ssssss hhhh hhhhhhh hhhh hhhhhh
TARGET 1392 DERTFDDIVH AFVSLTAIQI ALIDLLTSVG LKPDGIIGHS LGEVACGYAD
3hhd_2#2 542 destfddivh sfvsltaiqi glidllscmg lrpdgivghs lgevacgyad
TARGET h hhhh hhhhhhhhhh hhhhhhhh sssss hhhhhhhhh
3hhd_2#2 h hhhh hhhhhhhhhh hhhhhhhh sssss hhhhhhhhh
TARGET 1442 GCLSQREAVL AAYWRGQCIK DAHLPPGSMA AVGLSWEECK QRCPAGVVPA
3hhd_2#2 592 gclsqeeavl aaywrgqcik eahlppgama avglsweeck qrcppgvvpa
TARGET hhhhhh hhhhhhhhhh h sssss ssss hhhhh h sss
3hhd_2#2 hhhhhh hhhhhhhhhh h sssss ssss hhhhh h sss
TARGET 1492 CHNSEDTVTI SGPQAAVNEF VEQLKQEGVF AKEVRTGGLA FHSYFMEGIA
3hhd_2#2 642 chnskdtvti sgpqapvfef veqlrkegvf akevrtggma fhsyfmeaia
TARGET ss sssss sssshhhhhh hhhhhh s ssss hhhhhh
3hhd_2#2 ss sssss sssshhhhhh hhhhhh s ssss hhhhhh
TARGET 1542 PTLLQALKKV IREPRPRSAR WLSTSIPEAQ WQSSLARTSS AEYNVNNLVS
3hhd_2#2 692 ppllqelkkv irepkprsar wlstsipeaq whsslartss aeynvnnlvs
TARGET hhhhhhhhhh sss hhsss hhhhhhhhh
3hhd_2#2 hhhhhhhhhh sss hhsss hhhhhhhhh
TARGET 1592 PVLFQEALWH IPEHAVVLEI APHALLQAVL KRGVKSSCTI IPLMKRDHKD
3hhd_2#2 742 pvlfqealwh vpehavvlei aphallqavl krglkpscti iplmkkdhrd
TARGET ssshhhhh ssssss hhhhh hhh ss s
3hhd_2#2 ssshhhhh ssssss hhhhh hhh ss s
TARGET 1642 NLEFFLTNLG KVHLTGINVN PNALFPPVEF PAPRGTPLIS PHIKWDHSQT
3hhd_2#2 792 nlefflagig rlhlsgidan pnalfppvef paprgtplis plikwdhsla
TARGET hhhhhhhhhh hhhh hh
3hhd_2#2 hhhhhhhhhh hhhh hh h h
TARGET 1692 WDVPVAEDFP NG
3hhd_2#2 842 wdvpaaedfp ng-
TARGET
3hhd_2#2
Template's ligands section
Ligands in the template:CL : 1.
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page.
No ligands were included in the model.
Quaternary Structure Annotation of the Template
3hhd is annotated as DIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3hhd.pdb2.gz
Quaternary Structure Modelling of the Target Protein
Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure
Hence, the oligomeric structures of the target and the template can be assumed to be similar (=DIMER)
The corresponding reliability score is 0.67 (>0.5 indicates similarity)
To build the complex the following chains of the complex has been additionally identified: 3hhdB
Model was succesfully built as DIMER.
Template Selection
- Start SMR-Pipeline for:9dd9c357e3033b4d513340efd94d1abb on BC2-cluster at Wed May 8 02:55:31
2013
- Analyze BLAST summary ...
- Blast template search was successfull, number of templates selected for modeling: 5 go for
modeling ...
- No A3m found
- No template with A found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:5): model based on new templates
- Send 5 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- ***************************
- building model based on 3hhdC (2-853) was successful
- ***
- building model based on 2pngA (2113-2201) was successful
- *********
- building model based on 3tjmA (2211-2484) was successful
- ************************************
- Oligomeric modeling of 2vz8A was not successful, fall back to monomeric modeling
- building model based on 2vz8A (1-1135) was not successful go to next best template
- ************************************
- Oligomeric modeling of 2vz8B was not successful, fall back to monomeric modeling
- building model based on 2vz8B (1-1134) was not successful go to next best template
- *******************************************************************
- Oligomeric modeling of 2vz9B was not successful, fall back to monomeric modeling
- building model based on 2vz9B (1-2107) was not successful go to next best template
- *******************************************************************
- Oligomeric modeling of 2vz9A was not successful, fall back to monomeric modeling
- building model based on 2vz9A (1-2106) was not successful go to next best template
- *****************************
- building model based on 2vz8B (1215-2107) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:9dd9c357e3033b4d513340efd94d1abb on BC2-cluster at Wed May 8 03:19:28
2013
Template Search
| Template Description |
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2png: TYPE I RAT FATTY ACID SYNTHASE ACYL CARRIER PROTEIN (ACP) DOMAIN Solved by: NMR, Identified by BLAST |
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3hhd: NO TITLE GIVEN Solved by: X-RAY, Resolution: 2.15A, Identified by BLAST |
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2jfd: STRUCTURE OF THE MAT DOMAIN OF HUMAN FAS Solved by: X-RAY, Resolution: 2.81A, Identified by BLAST |
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2jfk: STRUCTURE OF THE MAT DOMAIN OF HUMAN FAS WITH MALONYL-COA Solved by: X-RAY, Resolution: 2.40A, Identified by BLAST |
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2cg5: STRUCTURE OF AMINOADIPATE-SEMIALDEHYDE DEHYDROGENASE- PHOSPHOPANTETHEINYL TRANSFERASE IN COMPLEX WITH CYTOSOLICACYL CARRIER PROTEIN AND COENZYME A Solved by: X-RAY, Resolution: 2.70A, Identified by BLAST |
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3tjm: CRYSTAL STRUCTURE OF THE HUMAN FATTY ACID SYNTHASE THIOESTWITH AN ACTIVATE SITE-SPECIFIC POLYUNSATURATED FATTY ACYL Solved by: X-RAY, Resolution: 1.48A, Identified by BLAST |
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2vz9: CRYSTAL STRUCTURE OF MAMMALIAN FATTY ACID SYNTHASE IN COMPLEX WITH NADP Solved by: X-RAY, Resolution: 3.3A, Identified by BLAST |
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1xkt: HUMAN FATTY ACID SYNTHASE: STRUCTURE AND SUBSTRATE SELECTIVITY OF THE THIOESTERASE DOMAIN Solved by: X-RAY, Resolution: 2.60A, Identified by BLAST |
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2px6: CRYSTAL STRUCTURE OF THE THIOESTERASE DOMAIN OF HUMAN FATTACID SYNTHASE INHIBITED BY ORLISTAT Solved by: X-RAY, Resolution: 2.30A, Identified by BLAST |
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2vz8: CRYSTAL STRUCTURE OF MAMMALIAN FATTY ACID SYNTHASE Solved by: X-RAY, Resolution: 3.2A, Identified by BLAST |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.