SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
3988

Sequence
UniProt P19711
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Helicase_C
RdRP_3
Peptidase_C53
Peptidase_S31
Flavi_DEAD
DUF3409
Peptidase_C74

Model 3D Structure
Model information:
Modelled residue range: 2774 to 2801
Based on template: [ 2ajj ]  
Sequence Identity [%]: 89%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    2774    SGNYILDL IYGLHKQINR GLKKMVLGWA                      
2ajjA     1       sgnyvldl iyslhkqinr glkkivlgwa -                    
                                                                      
TARGET                hhhh hhhhhhhhhh hhhhhhhh                        
2ajjA                 hhhh hhhhhhhhhh hhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 6d52439511fee0aec2394fd55b746265 on BC2-cluster at Sun Aug 31 06:34:54 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>6d52439511fee0aec2394fd55b746265
********************************************************************************
>1s48A Evalue:0 SeqID:99.830 Method:BLAST Type:MODEL
-------------------------------------------------------------------************-
>2ajjA Evalue:6.49664e-08 SeqID:89.286 Method:BLAST Type:MODEL
-------------------------------------------------------*------------------------
>2v6iA Evalue:7.2E-43 SeqID:20.554 Method:HHSEARCH Type:MODEL
--------------------------------------********----------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1s48A          3361           3948           BLAST          BUILT          
2ajjA          2774           2801           BLAST          BUILT          
2v6iA          1901           2301           HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 6d52439511fee0aec2394fd55b746265 on gopt-65.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 07:05:55 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.