SWISS-MODEL Repository - Model Details

Model Overview
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1
3988

Sequence
UniProt P19711
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Helicase_C
RdRP_3
Peptidase_C53
Peptidase_S31
Flavi_DEAD
DUF3409
Peptidase_C74

Model 3D Structure
Model information:
Modelled residue range: 1901 to 2301
Based on template: [ 2v6i ]  
Sequence Identity [%]: 20%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1901    KQIT---L ATGAGKTTEL PKAVIEE-IG RHKRVLVLIP LRAAAESVYQ
2v6iA     2       reltvldl hpgagktrrv lpqlvreavk krlrtvilap trvvasemye
                                                                      
TARGET             sss   s s          hhhhhhh       ssssss   hhhhhhhhh
2v6iA              sssss              hhhhhhhhhh h  ssssss   hhhhhhhhh


TARGET    1945  YMRLKHPSIS FNLRIGDMKE GDMATGITYA SYGYFCQMPQ PKLRAAMVEY
2v6iA     50    alr--gepir ym-------- g--neivdfm chstftmkll qgv--rvpny
                                                                      
TARGET          h                          sssss sshhhhhhhh h         
2v6iA           h        s ss              sssss sshhhhhhhh h         


TARGET    1995  SYIFLDEYHC ATPEQLAIIG KIHRFS--ES IRVVAMTATP AGSVT-TTGQ
2v6iA     95    nlyimdeahf ldpasvaarg yietrvsmgd agaifmtatp pgtteafpps
                                                                      
TARGET          sssssss      hhhhhhhh hhhh        sssss               
2v6iA           sssssss      hhhhhhhh hhhhhhh     sssss               


TARGET    2042  KHPIEEFIAP EVMKGEDLGS QFLDIAGLKI PVDEMKGNML VFVPTRNMAV
2v6iA     145   nspiideetr ipdkawnsgy e--------- witefdgrtv wfvhsikqga
                                                                      
TARGET              sssss                               sss sss  hhhhh
2v6iA               sssss                        hhh    sss sss  hhhhh


TARGET    2092  EVAKKLKAKG YNSGYYYSGE DPANLRVVTS QSPYVIVATN AIESGVTLPD
2v6iA     186   eigtclqkag kkvlylnrkt feseypkcks ekwdfvittd isemganf-k
                                                                      
TARGET          hhhhhhhh    sssss h    hhhhhhhhh    ssssss  hh        
2v6iA           hhhhhhhh    sssss hhh hhhhhhhhhh    ssssss  hh        


TARGET    2142  LDTVIDTGLK CEKRVRVSSK IPFIVTGLKR MAVTVGEQAQ RRGRVGRV--
2v6iA     235   adrvidprk- tikpilldg- ---rvsmqgp iaitpasaaq rrgrigrnpe
                                                                      
TARGET           sssss       sssssss   sssssss       hhhhhh hh        
2v6iA            sssss ss  s sssss       sssss   sss hhhhhh hhh       


TARGET    2190  KPGRYYRSQE TATGSKDYHY DLLQA----Q RYGIEDGINV TKSFREMNYD
2v6iA     280   klgdiyaysg nvssdneghv swtearmlld nvhvqggvva -qlytperek
                                                                      
TARGET             ssssss         sss hhhh                         hh 
2v6iA              ssssss         sss hhhhhhhhh                    hh 


TARGET    2236  WSLYEE-DSL LITQLEILNN LLISEDLPAA VKNIMART-- ---------D
2v6iA     329   teayegefkl ktnqrkvfse lirtgdlpvw lafqvasanv eyhdrkwcfd
                                                                      
TARGET                      hhhhhhhhh hhhh    hh hhhhhh               
2v6iA                       hhhhhhhhh hhhh    hh hhhhhhh         hh   


TARGET    2274  HPEPIQLAYN SYEVQV---- ---PVLFPKI RNGEV ---- ----------
2v6iA     379   gpnehlllen nqeievwtrq gqrrvlkprw ldgritsdhl nlksfkefas
                                                                      
TARGET              ssss                   ssss                       
2v6iA                         sss        sss             hh hhhhhhhhhh


TARGET          ---                                                   
2v6iA     429   gkr                                                   
                                                                      
TARGET                                                                
2v6iA

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 6d52439511fee0aec2394fd55b746265 on BC2-cluster at Sun Aug 31 06:34:54 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>6d52439511fee0aec2394fd55b746265
********************************************************************************
>1s48A Evalue:0 SeqID:99.830 Method:BLAST Type:MODEL
-------------------------------------------------------------------************-
>2ajjA Evalue:6.49664e-08 SeqID:89.286 Method:BLAST Type:MODEL
-------------------------------------------------------*------------------------
>2v6iA Evalue:7.2E-43 SeqID:20.554 Method:HHSEARCH Type:MODEL
--------------------------------------********----------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1s48A          3361           3948           BLAST          BUILT          
2ajjA          2774           2801           BLAST          BUILT          
2v6iA          1901           2301           HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 6d52439511fee0aec2394fd55b746265 on gopt-65.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 07:05:55 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.