SWISS-MODEL Repository - Model Details

Model Overview
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1
340

Sequence
UniProt P22536
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
DUF1859
DUF1860

Model 3D Structure
Model information:
Modelled residue range: 142 to 340
Based on template: [ 1yq8 ]  
Sequence Identity [%]: 95%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    142     VVVEDSGA SFGESLLDTT SEPGKILVKR ISGGSGITVT DYGDQVEIEA
1yq8A     142     vvvedsga sfgeslldtt sepgkilvkr isggsgitvt dygdqveiea
                                                                      
TARGET                                                sssss ss  ssssss
1yq8A                                                 sssss ss  ssssss


TARGET    190   SGGGGGGGGV TDALSLMYST STGGPASIAA NALTDFDLSG ALTVNSVGTG
1yq8A     190   s--------v tdalslmyst stggpasiaa naltdfdlsg altvnsvgtg
                                                                      
TARGET          s           sssssss                          ssssss  s
1yq8A           s           sssssss                          ssssss  s


TARGET    240   LTKSAAGIQL AAGKSGLYQI TMTVKNNTVT TGNYLLRVKY GSSDFVVACP
1yq8A     240   ltksaagiql aagksglyqi tmtvknntvt tgnyllrvky gssdfvvacp
                                                                      
TARGET          ssss  ssss s    sssss ssssss      sssssssss   ssssssss
1yq8A           ssss  ssss s    sssss ssssss      sssssssss   ssssssss


TARGET    290   ASSLTAGGTI SLLIYCNVLG VPSLDVLKFS LCNDGAALSN YIINITAAKI
1yq8A     290   assltaggti slliycnvlg vvsldvlkfs lcndgaalsn yiinitaaki
                                                                      
TARGET          s    sssss ssssss         ssssss ssss        sssssssss
1yq8A           s    sssss ssssss         ssssss ssss        sssssssss


TARGET    340   N                                                     
1yq8A     340   n-                                                    
                                                                      
TARGET                                                                
1yq8A

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: c3511f3bce144d9ae2906cfcb90875e8 on BC2-cluster at Fri Aug 29 16:09:17 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>c3511f3bce144d9ae2906cfcb90875e8
*************************************************************************************
>1yq8A Evalue:3.50114e-82 SeqID:95.477 Method:BLAST Type:MODEL
-----------------------------------*************-************************************
>1w8xN Evalue:0 SeqID:35.185 Method:HHSEARCH Type:MODEL
--**************************---------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1yq8A          142            340            BLAST          BUILT          
1w8xN          9              113            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: c3511f3bce144d9ae2906cfcb90875e8 on gopt-73.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 16:11:55 2008


Template Description
Match Chain SeqId

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.