SWISS-MODEL Repository - Model Details

Model Overview
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1
1199

Sequence
UniProt P23385
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
7tm_3
ANF_receptor
NCD3G
GluR_Homer-bdg

Model 3D Structure
Model information:
Modelled residue range: 35 to 512
Based on template: [ 1ewt ]  
Sequence Identity [%]: 95%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    35      QRSVARMD GDVIIGALFS VHHQPPAEKV PERKCGEIRE QYGIQRVEAM
1ewtB     35      qrsvarmd gdviigalfs vhhqppaekv perkcgeire qygiqrveam
                                                                      
TARGET                sss    sssssss  sss        hh    sss     hhhhhhh
1ewtB                 sss    sssssss  sss        hh    sss     hhhhhhh


TARGET    83    FHTLDKINAD PVLLPNITLG SEIRDSCWHS SVALEQSIEF IRDSLISIRD
1ewtB     83    fhtldkinad pvllpnitlg seirdscwhs svaleqsief irdslisir-
                                                                      
TARGET          hhhhhh              s ssssss   h hhhhhhhhhh hhhhhhh   
1ewtB           hhhhhh              s ssssss   h hhhhhhhhhh hhhhhhh   


TARGET    133   EKDGLNRCLP DGQTLPPGRT KKPIAGVIGP GSSSVAIQVQ NLLQLFDIPQ
1ewtB     154   ---------- ---------- -kpiagvigp gsssvaiqvq nllqlfdipq
                                                                      
TARGET                     hhhhhhhhh       ssss    hhhhhhhh hhhh    ss
1ewtB                                      ssss    hhhhhhhh hhhh    ss


TARGET    183   IAYSATSIDL SDKTLYKYFL RVVPSDTLQA RAMLDIVKRY NWTYVSAVHT
1ewtB     183   iaysatsidl sdktlykyfl rvvpsdtlqa ramldivkry nwtyvsavht
                                                                      
TARGET          ss      hh        sss ss    hhhh hhhhhhhh     ssssssss
1ewtB           ss      hh        sss ss    hhhh hhhhhhhh     ssssssss


TARGET    233   EGNYGESGMD AFKELAAQEG LCIAHSDKIY SNAGEKSFDR LLRKLRERLP
1ewtB     233   egnygesgmd afkelaaqeg lciahsdkiy snageksfdr llrklrerlp
                                                                      
TARGET            hhhhhhhh hhhhhhhhh   sss  sss       hhhhh hhhhhhh   
1ewtB             hhhhhhhh hhhhhhhhh   sss  sss       hhhhh hhhhhhh   


TARGET    283   KARVVVCFCE GMTVRGLLSA MRRLGVVGEF SLIGSDGWAD RDEVIEGYEV
1ewtB     283   karvvvcfce gmtvrgllsa mrrlgvvgef sligsdgwad rdeviegyev
                                                                      
TARGET            ssssss    hhhhhhhhh hhhh       ssssss             hh
1ewtB             ssssss    hhhhhhhhh hhhh       ssssss             hh


TARGET    333   EANGGITIKL QSPEVRSFDD YFLKLRLDTN TRNPWFPEFW QHRFQCRLPG
1ewtB     333   eanggitikl qspevrsfdd yflklrldtn trnpwfpefw qhrfqcrlpg
                                                                      
TARGET          hh  ssssss s     hhhh hh             hhhhhh hhh       
1ewtB           hh  ssssss s     hhhh hh             hhhhhh hhh       


TARGET    383   HLLENPNFKK VCTGNESLEE NYVQDSKMGF VINAIYAMAH GLQNMHHALC
1ewtB     383   hllenpnfkk vctgneslee nyvqdskmgf vinaiyamah glqnmhhalc
                                                                      
TARGET                                      hhhh hhhhhhhhhh hhhhhhhh  
1ewtB                                       hhhh hhhhhhhhhh hhhhhhhhh 


TARGET    433   PGHVGLCDAM KPIDGRKLLD FLIKSSFVGV SGEEVWFDEK GDAPGRYDIM
1ewtB     433   pghvglcdam kpidgrklld flikssfvgv sgeevwfdek gdapgrydim
                                                                      
TARGET                         hhhhhh hhh   sss    sss          ssssss
1ewtB                           hhhhh hhh   sss    sss           sssss


TARGET    483   NLQYTEANRY DYVHVGTWHE GVLNIDDYKI                      
1ewtB     483   nlqyteanry dyvhvgtwhe gvlniddyki -                    
                                                                      
TARGET          ss           ssssssss  sssss                          
1ewtB           sss        sssssssss   sssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 20f6906a15893dcd365e7a1d29ba8eb4 on BC2-cluster at Sat Aug 30 14:53:24 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>20f6906a15893dcd365e7a1d29ba8eb4
********************************************************************************
>1ewtB Evalue:0 SeqID:95.397 Method:BLAST Type:MODEL
--*******-************************----------------------------------------------
>2e4uA Evalue:0 SeqID:41.622 Method:HHSEARCH Type:MODEL
--*******-***************-*************-----------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1ewtB          35             512            BLAST          BUILT          
2e4uA          36             582            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 20f6906a15893dcd365e7a1d29ba8eb4 on gopt-52.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 15:08:54 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.