SWISS-MODEL Repository - Model Details

Model Overview
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1
588

Sequence
UniProt P23785
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Granulin
Granulin
Granulin
Granulin
Granulin
Granulin
Granulin

Model 3D Structure
Model information:
Modelled residue range: 278 to 333
Based on template: [ 2jye ]  
Sequence Identity [%]: 83%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    278       EVKCDL EVSCPDGYTC CRLNTGAWGC CPFTKAVCCE DHIHCCPAGF
2jyeA     1     am--dvkcdm evscpdgytc crlqsgawgc cpftqavcce dhihccpagf
                                                                      
TARGET                           ssss sss   ssss sss                  
2jyeA                            ssss sss   ssss sss                  


TARGET    324   QCHTETGTCE  --------- ----                            
2jyeA     49    tcdtqkgtce qklaaalehh hhhh                            
                                                                      
TARGET          sss    sss                                            
2jyeA           sss    sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 7e2a7d15225622efe3f70bd48368f2b6 on BC2-cluster at Sat Aug 30 19:31:10 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>7e2a7d15225622efe3f70bd48368f2b6
************************************************************************************
>2jyeA Evalue:2.11174e-15 SeqID:83.929 Method:BLAST Type:MODEL
----------------------------------------********------------------------------------
>2jyuA Evalue:1.0316e-11 SeqID:74.545 Method:BLAST Type:MODEL
---------------------------------------------------********-------------------------
>2jyvA Evalue:2.5E-19 SeqID:81.250 Method:HHSEARCH Type:MODEL
-----------------*****--------------------------------------------------------------
>2jyvA Evalue:1.3E-06 SeqID:54.839 Method:HHSEARCH Type:MODEL
-----------------------------****---------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2jyeA          278            333            BLAST          BUILT          
2jyuA          361            415            BLAST          BUILT          
2jyvA          122            153            HHSEARCH       BUILT          
2jyvA          204            234            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 7e2a7d15225622efe3f70bd48368f2b6 on gopt-56.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 19:35:57 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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