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Model Overview
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1
383

Sequence
UniProt P25087
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P25087: 4932.YML008C

Domain
Link to: [ InterPro ]
Methyltransf_11
Sterol_MT_C

Model 3D Structure
Model information:
Modelled residue range: 121 to 179
Based on template: [ 3egi ]  
Sequence Identity [%]: 38%
Model date: 2013-02-18
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (3egi): TETRAMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: ADP: 1.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

TARGET    1                                                      DLVLD
3egiC     649   plgsrlfsrf ddgikldreg wfsvtpekia ehiagrvsqs fkc--dvvvd
                                                                      
TARGET                                                           sssss
3egiC              sssssss ss               hhhh hhhhhhhh        sssss


TARGET    6     VGCGVGGPAR EIARFTGCNV IGLNNNDYQI AKAKYYAKKY NLSDQMDFVK
3egiC     697   afcgvggnti qfa-ltgxrv iaididpvki alarnnaevy giadkiefic
                                                                      
TARGET                hhhh hhh     ss ssss  hhhh hhhhhhhhhh     ssssss
3egiC           s     hhhh hhh h   ss ssss  hhhh hhhhhhhhhh     ssssss


TARGET    56    GDFM ----- ---------- ---------- ---------- ----------
3egiC     746   gdflllasfl kadvvflspp waetfdirtx xspdgfeifr lskkitnniv
                                                                      
TARGET          s                                                     
3egiC           s hhhhh       ssss          hhh      hhhhhh hhhhh  sss


TARGET          ---------- ---------- ---------- ---------- -----     
3egiC     803   yflprnadid qvaslagpgg qveieqnfln nklktitayf gdlir     
                                                                      
TARGET                                                                
3egiC           sss     hh hhhhh    s sssssssss   sssssssss           



Quality


Template's ligands section
Ligands in the template: ADP: 1.
Ligands in the template that will be assessed: ADP1.
Model's ligands section
ADP1
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand C.ADP1 will not be included in the model.
ADP1: conservation:False, RMSD:False, included: False

No ligands were included in the model.


Quaternary Structure Annotation of the Template
3egi is annotated as TETRAMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3egi.pdb1.gz

Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 38.983) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode

The target structure was calculated as SINGLE CHAIN
To build the complex the following chains of the complex has been additionally identified: 3egiB 3egiA


Template Selection
 - Start SMR-Pipeline for:f6aa3cf60680612f789b2a91496e3bab on BC2-cluster at Mon Feb 18 18:34:11
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with B found
 - No template with C found
 - No template with B found
 - No template with C found
 - No template with B found
 - No template with C found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with K found
 - No template with D found
 - No template with B found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:4): model based on new templates
 - Send 4 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                          ************
 - building model based on 3egiC (121-179) was successful 
 -                          **********************
 - building model based on 1ve3A (118-223) was successful 
 -                   ******************************
 - building model based on 3busA (85-227) was successful 
 -                  ****************************************
 - building model based on 2o57D (80-272) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:f6aa3cf60680612f789b2a91496e3bab on BC2-cluster at Mon Feb 18 18:39:03
2013 




Template Description
Match Chain SeqId

4hc4: HUMAN HMT1 HNRNP METHYLTRANSFERASE-LIKE PROTEIN 6 (S. CERE
Solved by: X-RAY, Resolution: 1.97A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

116-222 4hc4A 21%
[Model]

4hg2: THE STRUCTURE OF A PUTATIVE TYPE II METHYLTRANSFERASE FROMANAEROMYXOBACTER DEHALOGENANS.
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

118-227 4hg2A 20%
[Model]
110-227 4hg2B 20%
[Model]

4a6d: CRYSTAL STRUCTURE OF HUMAN N-ACETYLSEROTONIN METHYLTRANSFERASE (ASMT) IN COMPLEX WITH SAM
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

109-277 4a6dA 18%
[Model]

4a6e: CRYSTAL STRUCTURE OF HUMAN N-ACETYLSEROTONIN METHYLTRANSFE(ASMT) IN COMPLEX WITH SAM AND N-ACETYLSEROTONIN
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

109-277 4a6eA 18%
[Model]

2igt: CRYSTAL STRUCTURE OF THE SAM DEPENDENT METHYLTRANSFERASE FROM AGROBACTERIUM TUMEFACIENS
Solved by: X-RAY, Resolution: 1.89A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

116-224 2igtB 17%
[Model]
116-224 2igtC 17%
[Model]
116-224 2igtA 17%
[Model]

4htf: CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE-DEPENDENT METHYLFROM ESCHERICHIA COLI IN COMPLEX WITH S-ADENOSYLMETHIONIN
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

99-275 4htfB 20%
[Model]
99-275 4htfA 17%
[Model]

3ou7: DHPI-SAM-HEP COMPLEX
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

110-275 3ou7A 16%
[Model]
111-274 3ou7D 16%
[Model]
72-275 3ou7C 15%
[Model]
72-275 3ou7B 15%
[Model]

3ou6: DHPI-SAM COMPLEX
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

111-274 3ou6A 16%
[Model]
111-274 3ou6D 16%
[Model]
111-275 3ou6B 16%
[Model]
112-275 3ou6C 16%
[Model]

3uko: CRYSTAL STRUCTURE OF S-NITROSOGLUTATHIONE REDUCTASE FROM ATHALIANA, COMPLEX WITH NADH
Solved by: X-RAY, Resolution: 1.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

110-225 3ukoA 16%
[Model]
110-225 3ukoB 16%
[Model]

4dl9: CRYSTAL STRUCTURE OF S-NITROSOGLUTATHIONE REDUCTASE FROM T(SOLANUM LYCOPERSICUM) IN COMPLEX WITH NAD+
Solved by: X-RAY, Resolution: 2.14A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

109-226 4dl9B 15%
[Model]
109-226 4dl9A 15%
[Model]

4dla: CRYSTAL STRUCTURE OF S-NITROSOGLUTATHIONE REDUCTASE APOENZTOMATO (SOLANUM LYCOPERSICUM)
Solved by: X-RAY, Resolution: 2.14A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

109-226 4dlaB 15%
[Model]
109-226 4dlaA 15%
[Model]

3ou2: DHPI-SAH COMPLEX STRUCTURE
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

114-275 3ou2A 15%
[Model]

4dlb: STRUCTURE OF S-NITROSOGLUTATHIONE REDUCTASE FROM TOMATO (SLYCOPERSICUM) CRYSTALLIZED IN PRESENCE OF NADH AND GLUTAT
Solved by: X-RAY, Resolution: 2.14A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

109-226 4dlbA 15%
[Model]
109-226 4dlbB 15%
[Model]

3vyw: CRYSTAL STRUCTURE OF MNMC2 FROM AQUIFEX AEOLICUS
Solved by: X-RAY, Resolution: 2.49A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

78-274 3vywA 14%
[Model]
78-275 3vywB 14%
[Model]
78-275 3vywC 14%
[Model]
77-275 3vywD 14%
[Model]

4b7x: CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PA1648 FROM PSEUDOMONAS AERUGINOSA.
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

111-224 4b7xF 14%
[Model]
111-224 4b7xB 14%
[Model]
111-224 4b7xE 14%
[Model]
111-225 4b7xA 14%
[Model]
112-224 4b7xH 15%
[Model]
113-225 4b7xD 14%
[Model]
111-224 4b7xJ 14%
[Model]
113-225 4b7xC 14%
[Model]
112-225 4b7xL 14%
[Model]
111-224 4b7xG 14%
[Model]

4b7c: CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PA1648 FROM PSEUDOMONAS AERUGINOSA.
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

111-224 4b7cB 14%
[Model]
113-225 4b7cA 14%
[Model]
111-224 4b7cC 15%
[Model]
113-225 4b7cD 14%
[Model]
111-225 4b7cE 15%
[Model]
112-225 4b7cF 14%
[Model]
112-224 4b7cH 14%
[Model]
111-225 4b7cG 14%
[Model]
111-225 4b7cJ 14%
[Model]
112-224 4b7cI 14%
[Model]
112-225 4b7cL 14%
[Model]

4g56: CRYSTAL STRUCTURE OF FULL LENGTH PRMT5/MEP50 COMPLEXES FROLAEVIS
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

120-223 4g56A 13%
[Model]
121-223 4g56C 13%
[Model]

3ufb: CRYSTAL STRUCTURE OF A MODIFICATION SUBUNIT OF A PUTATIVE RESTRICTION ENZYME FROM VIBRIO VULNIFICUS YJ016
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

74-224 3ufbA 11%
[Model]

4gqb: CRYSTAL STRUCTURE OF THE HUMAN PRMT5:MEP50 COMPLEX
Solved by: X-RAY, Resolution: 2.06A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

119-223 4gqbA 11%
[Model]

3hm2: CRYSTAL STRUCTURE OF PUTATIVE PRECORRIN-6Y C5,15- METHYLTRANSFERASE TARGETED DOMAIN FROM CORYNEBACTERIUM DIPHTHERIAE
Solved by: X-RAY, Resolution: 2.21A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

109-274 3hm2B 13%
[Model]
109-274 3hm2A 13%
[Model]
111-273 3hm2C 10%
[Model]
111-274 3hm2D 10%
[Model]
111-274 3hm2G 12%
[Model]
110-274 3hm2H 10%
[Model]
110-274 3hm2E 9%
[Model]
111-274 3hm2F 9%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




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