SWISS-MODEL Repository - Model Details

Model Overview
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1
993

Sequence
UniProt P25941 Regulatory protein AfsR
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145).
Database: Swiss-Prot (Reviewed) manually annotated and reviewed

Domain
Link to: [ InterPro ]
Trans_reg_C
NB-ARC
BTAD
TPR_2
TPR_10
TPR_11

Model 3D Structure
Model information:
Modelled residue range: 25 to 267
Based on template: [ 2fez ]  
Sequence Identity [%]: 35%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

TARGET    25       LRFGVLG PVRAWRDGET LATGSPQQRA LLAALLLREG RTATAGELID
2fezA     10    r--ldfgllg plqmtidgtp vpsgtpkqra vlamlvinrn rpvgvdalit
                                                                      
TARGET              sss      ssss  ss s    hhhhh hhhhhhh        hhhhhh
2fezA           s  ssss      sssss ss s    hhhhh hhhhhhh        hhhhhh


TARGET    72    ALWGEEPPSQ ALAAVRTYAS RLRKVL---- --DPGVLVSE SGGYAVRGLA
2fezA     58    alweewppsg arasihsyvs nlrkllggag idprvvlaaa ppgyrls-ip
                                                                      
TARGET          hh         hhhhhhhhhh hhhhh           sssss   sssss   
2fezA           hh         hhhhhhhhhh hhhhhhhh     hhhsssss   sssss   


TARGET    116   EGALDLARAQ DLASAAEKAR SAGDLCHARD LLRRALDLWD GEVLAGV-PG
2fezA     107   dntcdlgrfv aektagvhaa aagrfeqasr hlsaalrewr gpvlddlrdf
                                                                      
TARGET              hhhhhh hhhhhhhhhh    hhhhhhh hhhhhhh              
2fezA               hhhhhh hhhhhhhhhh    hhhhhhh hhhhhhh              


TARGET    165   PYAQTQRVRL GEWRLQLLET RLDMDLDQGC HAEAVSELTA LTAAHPLRER
2fezA     157   qfvepfatal vedkvlahta kaeaeiacgr asaviaelea ltfehpyrep
                                                                      
TARGET           hhhhhhhhh hhhhhhhhhh hhhhhhhh    hhhhhhhhh hhhh    hh
2fezA            hhhhhhhhh hhhhhhhhhh hhhhhhhh    h   hhhhh hhhh     h


TARGET    215   LRELLMLALY RSGRQAEALA VYADTRRLLA DELGVDPRPG LQELQQRILQ
2fezA     207   lwtqlitayy lsdrqsdalg ayrrvkttla ddlgidpgpt lralnerilr
                                                                      
TARGET          hhhhhhhhhh h   hhhhhh hhhhhhhhhh hh      hh hhhhhhhhhh
2fezA           hhhhhhhhhh h   hhhhhh hhhhhhhhhh hh      hh hhhhhhhhhh


TARGET    265   ADP ------ ---------- ---------- ---------- ----------
2fezA     257   qqpldakksa kttaagtvtv ldqrtmasgq qavaylhdia sgrgyplqaa
                                                                      
TARGET                                                                
2fezA                hhhhh hhhhhhhhhh hhh           ssssss    sssss  s


TARGET          ---------- ---------- ---------- ---------- ----------
2fezA     307   atrigrlhdn divldsanvs rhhavivdtg tnyvindlrs sngvhvqher
                                                                      
TARGET                                                                
2fezA           ssssss      sss       sssssssss   sssssss      ssss ss


TARGET          ---------- ---------- ------                          
2fezA     357   irsavtlndg dhiricdhef tfqisa                          
                                                                      
TARGET                                                                
2fezA           s   sss    sssss  sss sss                             



Quality


no data available!


no data available!


Template Selection
START PIPELINE ON ID: f1aabe6ad15abdd18931d698c36dd9e6 on BC2-cluster at Fri Aug 29 22:36:49 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>f1aabe6ad15abdd18931d698c36dd9e6
***********************************************************************************
>2fezA Evalue:9.1E-43 SeqID:35.600 Method:HHSEARCH Type:MODEL
--********************-------------------------------------------------------------
>2a5yB Evalue:1.4E-15 SeqID:12.605 Method:HHSEARCH Type:MODEL
------------------------***************************--------------------------------
>1hz4A Evalue:2.4E-07 SeqID:23.438 Method:HHSEARCH Type:MODEL
---------------------------------------------------------------------*****---------
>1hz4A Evalue:8.4E-07 SeqID:13.362 Method:HHSEARCH Type:MODEL
--------------------------------------------------------------*******************--


TEMPLATE ID    START          STOP           METHOD         STATUS         
2fezA          25             267            HHSEARCH       BUILT          
2a5yB          285            615            HHSEARCH       NOT BUILT      
1hz4A          828            891            HHSEARCH       BUILT          
1hz4A          748            975            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: f1aabe6ad15abdd18931d698c36dd9e6 on gopt-56.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 22:44:30 2008 


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




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