SWISS-MODEL Repository - Model Details

Model Overview
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1
993

Sequence
UniProt P25941
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Trans_reg_C
NB-ARC
BTAD
TPR_2
TPR_10
TPR_11

Model 3D Structure
Model information:
Modelled residue range: 828 to 891
Based on template: [ 1hz4 ]  
Sequence Identity [%]: 23%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

                                                       
1hz4A     1     eikdiredtm haefnalraq vaindgnpde aerlaklale elppgwfysr
                                                                      
                                                       
1hz4A               hhhhhh hhhhhhhhhh hhh   hhhh hhhhhhhhh         hhh


                                                       
1hz4A     51    ivatsvlgev lhckgeltrs lalmqqteqm arqhdvwhya lwsliqqsei
                                                                      
                                                       
1hz4A           hhhhhhhhhh hh   hhhhh hhhhhhhhhh hhh   hhhh hhhhhhhhhh


                                                       
1hz4A     101   lfaqgflqta wetqekafql ineqhleqlp mheflvrira qllwawarld
                                                                      
                                                       
1hz4A           hh   hhhhh hhhhhhhhhh hhhh       hhhhhhhhhh hhhh   hhh


                                                       
1hz4A     151   eaeasarsgi evlssyqpqq qlqclamliq cslargdldn arsqlnrlen
                                                                      
                                                       
1hz4A           hhhhhhhhhh hh      h    hhhhhhhh hhhh   hhh hhhhhhhhhh


                                                       
1hz4A     201   llgngkyhsd wisnankvrv iywqmtgdka aaanwlrhta kpefannhfl
                                                                      
                                                       
1hz4A           hh      hh hhhhhhhhhh hhhh   hhh hhhhhhhh             


TARGET    828          NLS RAQLGMGNVA EAVDIARQGL AVYAELGRTM RLANGHFALG
1hz4A     251   qgqwr--nia raqillgefe paeivleeln enarslrlms dlnrnlllln
                                                                      
TARGET                  hh hhhhhh   h hhhhhhhhhh hhhh   hhh hhhhhhhhhh
1hz4A            hhhh  hhh hhhhhh   h hhhhhhhhhh hhhh   hhh hhhhhhhhhh


TARGET    871   VALTRAGRHE EALGEFAEAL D -------- ---------- ----------
1hz4A     299   qlywqagrks daqrvlldal klanrtgfis hfviegeama qqlrqliqln
                                                                      
TARGET          hhhhh   hh hhhhhhhhhh h                               
1hz4A           hhhh   hhh hhhhhhhhhh hhhhhh   h hhh   hhhh hhhhhhhh  


TARGET          ---------- --------                                   
1hz4A     349   tlpeleqhra qrilrein                                   
                                                                      
TARGET                                                                
1hz4A              hhhhhhh hhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: f1aabe6ad15abdd18931d698c36dd9e6 on BC2-cluster at Fri Aug 29 22:36:49 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>f1aabe6ad15abdd18931d698c36dd9e6
***********************************************************************************
>2fezA Evalue:9.1E-43 SeqID:35.600 Method:HHSEARCH Type:MODEL
--********************-------------------------------------------------------------
>2a5yB Evalue:1.4E-15 SeqID:12.605 Method:HHSEARCH Type:MODEL
------------------------***************************--------------------------------
>1hz4A Evalue:2.4E-07 SeqID:23.438 Method:HHSEARCH Type:MODEL
---------------------------------------------------------------------*****---------
>1hz4A Evalue:8.4E-07 SeqID:13.362 Method:HHSEARCH Type:MODEL
--------------------------------------------------------------*******************--


TEMPLATE ID    START          STOP           METHOD         STATUS         
2fezA          25             267            HHSEARCH       BUILT          
2a5yB          285            615            HHSEARCH       NOT BUILT      
1hz4A          828            891            HHSEARCH       BUILT          
1hz4A          748            975            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: f1aabe6ad15abdd18931d698c36dd9e6 on gopt-56.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 22:44:30 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.