SWISS-MODEL Repository - Model Details

Model Overview
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1
232

Sequence
UniProt P26472
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
WaaY

Model 3D Structure
Model information:
Modelled residue range: 116 to 189
Based on template: [ 1tqi ]  
Sequence Identity [%]: 22%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

                                                       
1tqiA     1     mniaelygkm gkhswrimda ifknlwdyey vplqlissha rigeekarni
                                                                      
                                                       
1tqiA             hhhhhh    hhhhhhhhh hh         ssshhhhhhh    hhhhhhh


                                                       
1tqiA     51    lkylsdlrvv qnrqkdyegs tftfiglsly slhrlvrsgk vdaigklmge
                                                                      
                                                       
1tqiA           hhhhhhh ss sss    sss ssshhhhhhh hhhhhhh      ssssssss


                                                       
1tqiA     101   gkesavfncy sekfgecvvk fhkvkvkehf svlairsarn efralqklqg
                                                                      
                                                       
1tqiA           s ssssssss s   ssssss sss      h hhhhhhhhhh hhhhhhhh  


TARGET    116               KTYVMIIEY IEGIELVDMP E-ISDEVRGK IKQSIYSLHQ
1tqiA     164   lavpkvyaw- -egnavlmel idakelyrvr venpdevldm ileevakfyh
                                                                      
TARGET                                   sss         hhhhhh hhhhhhhhhh
1tqiA               sssss   s ssssss     sss        hhhhhhh hhhhhhhhhh


TARGET    154   HGMVSGDPHK GNFILQGNEI RIIDLSGKRP SRQRKA --- ----------
1tqiA     212   rgivhgdlsq ynvlvseegi wiidfpqsve vgeegwreil erdvrniity
                                                                      
TARGET          hsss        sssss  ss sss     ss s                    
1tqiA           hsss        sssss  ss sss     ss s    hhhhh hhhhhhhhhh


TARGET          ---------- ---------- -                               
1tqiA     262   fsrtyrtekd insaidrilq e                               
                                                                      
TARGET                                                                
1tqiA           hhhh       hhhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 965129acfd775e91e078def44ea670b2 on BC2-cluster at Sun Aug 31 13:01:34 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>965129acfd775e91e078def44ea670b2
******************************************************************************
>1tqiA Evalue:1.2E-05 SeqID:22.667 Method:HHSEARCH Type:MODEL
--------------------------------------*************************---------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1tqiA          116            189            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 965129acfd775e91e078def44ea670b2 on ms-3.cluster.bc2.ch BC2-Cluster at Sun
Aug 31 13:04:35 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.