SWISS-MODEL Repository - Model Details

Model Overview
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1
551

Sequence
UniProt P27113
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
EGF
Lectin_C
Sushi
Sushi
Sushi
Sushi
Sushi

Model 3D Structure
Model information:
Modelled residue range: 24 to 180
Based on template: [ 1g1t ]  
Sequence Identity [%]: 85%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    24      WTYHFSAE NMTYDEASAY CQQNYTHLVA IQNKEEIDYL NSILDYSPSY
1g1tA     1       wsyntste amtydeasay cqqrythlva iqnkeeieyl nsilsyspsy
                                                                      
TARGET             sssss      hhhhhhh hhhh  sss      hhhhhh hhh       
1g1tA              sssss      hhhhhhh hhhh  sss      hhhhhh hhh       


TARGET    72    YWIGIRKVNN VWIWVGTHKP LTEGAKNWAP GEPNNKQNNE DCVEIYIKRP
1g1tA     49    ywigirkvnn vwvwvgtqkp lteeaknwap gepnnrqkde dcveiyikre
                                                                      
TARGET          ssssssss   sssss   ss s                      sssss    
1g1tA           ssssssss   sssss   ss s                      sssss    


TARGET    122   KDTGMWNDER CSKKKLALCY TAACTEASCS GHGECIETIN NYSCKCYPGF
1g1tA     99    kdvgmwnder cskkklalcy taactntscs ghgecvetin nytckcdpgf
                                                                      
TARGET              sssss        ssss s           sssssss   sssssss ss
1g1tA               sssss        ssss s           sssssss   sssssss ss


TARGET    172   SGLKCEQVV                                             
1g1tA     149   sglkceqiv-                                            
                                                                      
TARGET          s     sss                                             
1g1tA           s     sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: e555e7cb8beb8e1f14006742e7df9285 on BC2-cluster at Sat Aug 30 15:29:32 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>e555e7cb8beb8e1f14006742e7df9285
*******************************************************************************
>1g1tA Evalue:2.18954e-74 SeqID:85.987 Method:BLAST Type:MODEL
---***********************-----------------------------------------------------
>1c1zA Evalue:9.6E-40 SeqID:23.125 Method:HHSEARCH Type:MODEL
--------------------------********************************************---------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1g1tA          24             180            BLAST          BUILT          
1c1zA          181            489            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: e555e7cb8beb8e1f14006742e7df9285 on gopt-50.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 15:36:06 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.