SWISS-MODEL Repository - Model Details

Model Overview
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1
202

Sequence
UniProt P27597
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
ITAM

Model 3D Structure
Model information:
Modelled residue range: 35 to 113
Based on template: [ 1sy6 ]  
Sequence Identity [%]: 42%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

                                                       
1sy6A     0     mqsikgnhlv kvydyqedgs vlltcdaeak nitwfkdgkm igfltedkkk
                                                                      
                                                       
1sy6A                   ss sss     ss ssssss   s sssssss ss ssssss    


TARGET    35                                      ISPEKRFKV SISGTEVVVT
1sy6A     50    wnlgsnakdp rgmyqckgsq nkskplqvy- -yrmqtpykv sisgttvilt
                                                                      
TARGET                                                   ss sss ssssss
1sy6A           ssssss   s sssssss         ssss   ss     ss sss ssssss


TARGET    54    CPDVFGYDNI KWEKNDNLVE --------GA SNRELSQKEF SEVDDSGYYA
1sy6A     134   cpqy-pgsei lwqhndknig gdeddknigs dedhlslkef seleqsgyyv
                                                                      
TARGET          s       ss sssss sss               sssssss   hhhh ssss
1sy6A           s       ss sssss sss        ssss s sssssss   hhh  ssss


TARGET    96    CYADSIK--- EKSYLYLRAR V                               
1sy6A     183   cyprgskped anfylylrar v-                              
                                                                      
TARGET          ssss           sss                                    
1sy6A           ssss          sssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 23fbf404296b7708f90026a06421a0b8 on BC2-cluster at Fri Aug 29 20:57:59 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>23fbf404296b7708f90026a06421a0b8
********************************************************************
>1sy6A Evalue:9.6E-10 SeqID:42.222 Method:HHSEARCH Type:MODEL
-----------***************************------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1sy6A          35             113            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 23fbf404296b7708f90026a06421a0b8 on gopt-16.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 21:00:27 2008


Template Description
Match Chain SeqId

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.