SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
752

Sequence
UniProt P28840
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P28840: 10116.ENSRNOP000

Domain
Link to: [ InterPro ]
Peptidase_S8
P_proprotein
Proho_convert

Model 3D Structure
Model information:
Modelled residue range: 31 to 103
Based on template: [ 1kn6 ]  
Sequence Identity [%]: 94%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    31      FVNEWAAE IHGGPEAASA IAEELGYDLL GQIGSLENHY LFKHKNHPRR
1kn6A     4       fvnewaae ipggqeaasa iaeelgydll gqigslenhy lfkhkshprr
                                                                      
TARGET               sssss s   hhhhhh hhhhh  sss ss     sss sss       
1kn6A                sssss s   hhhhhh hhhhh  sss ss     sss sss       


TARGET    79    SRRSALHITK RLSDDDRVIW AEQQY                           
1kn6A     52    srrsalhitk rlsdddrvtw aeqqy-                          
                                                                      
TARGET                     hhhhhhh     sss                            
1kn6A                      hhhhhhh     sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: f9468727ad5628336114f8008c63c69f on BC2-cluster at Sun Aug 31 04:39:13 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>f9468727ad5628336114f8008c63c69f
************************************************************************************
>1kn6A Evalue:8.2516e-34 SeqID:94.521 Method:BLAST Type:MODEL
---********-------------------------------------------------------------------------
>1p8jA Evalue:0 SeqID:54.507 Method:HHSEARCH Type:MODEL
-------------**-**************************************************------------------
>2e1pA Evalue:4.6E-29 SeqID:16.497 Method:HHSEARCH Type:MODEL
----------*****-**************-*-******-**********----------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1kn6A          31             103            BLAST          BUILT          
1p8jA          122            597            HHSEARCH       BUILT          
2e1pA          88             453            HHSEARCH       NOT BUILT      

FINISHED PIPELINE ON ID: f9468727ad5628336114f8008c63c69f on gopt-56.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 04:45:59 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.