SWISS-MODEL Repository - Model Details

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1
367

Sequence
UniProt P29285
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
MCE
DUF330

Model 3D Structure
Model information:
Modelled residue range: 202 to 365
Based on template: [ 2iqi ]  
Sequence Identity [%]: 25%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    202       TYDLRT PQNLGPAAKT LSASLAIPEP TAVAMLQTQR MLFAPVGDN-
2iqiA     32    at--iyaptv rvtpnpawpq vswqllvakp saariidspr invrptpgel
                                                                      
TARGET                                   ssss               ssss      
2iqiA            s  ss                   sssss              ssss      


TARGET    247   PGFADFLWAD SIPKLVQARL IDSFENYDIA HAPLRTSDLG QADYQLLIDI
2iqiA     80    qvyhgagwaq patdmledsv vrafedsgki aavar----- isdyklaidv
                                                                      
TARGET          sss         hhhhhhhhh hhhhhh      sss          sssssss
2iqiA           sss sssss   hhhhhhhhh hhhhhh      sss         ssssssss


TARGET    297   RRFRIATDGE --TRVEIGLS ARIVDKN-GK VVASRLVETS EKLDKVEPAA
2iqiA     130   rrfesdyagq slpaatieln akllhssdqr vvasrtftva rpssstdtaa
                                                                      
TARGET          sssssss        ssssss sssss    s ssssssssss s      hhh
2iqiA           sssssss      ssssssss ssssss   s ssssssssss sss    hhh


TARGET    344   AVAAFDAAFA RIAKELIGWT VL -------                      
2iqiA     180   vaaafeqalt qvttelvgwt litgqqdsqt                      
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh hh                              
2iqiA           hhhhhhhhhh hhhhhhhhhh hhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: bf306daacb4b7fc7f090ad733b3f3033 on BC2-cluster at Wed Sep  3 15:37:25 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>bf306daacb4b7fc7f090ad733b3f3033
**************************************************************************
>2iqiA Evalue:3.7E-20 SeqID:25.595 Method:HHSEARCH Type:MODEL
----------------------------------------****************-****************-


TEMPLATE ID    START          STOP           METHOD         STATUS         
2iqiA          202            365            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: bf306daacb4b7fc7f090ad733b3f3033 on ms-5.cluster.bc2.ch BC2-Cluster at Wed
Sep  3 15:41:10 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.