SWISS-MODEL Repository 
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2013-01-30. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
TARGET 1 DAEGV WSPDIEQSFQ EALSIYPPCG RRKIILSDEG KMYGRNELIA
2hzd_1#8 1 mdn--daegv wspdieqsfq ealsiyppcg rrkiilsdeg kmygrnelia
TARGET hhhhhhh hhhhh hhh hhhhh
2hzd_1#8 hhhhhhh hhhhh hhh hhhhh
TARGET 46 RYIKLRTGKT RTRKQVSSHI QVLARRKLRE I --
2hzd_1#8 49 ryiklrtgkt rtrkqvsshi qvlarrksrd lvpr
TARGET hhhhh hhhhhhh hhhhhhh
2hzd_1#8 hhhhh hhhhhhh hhhhhhh
Template's ligands section
Template without ligands.
No ligands were included in the model.
Quaternary Structure Annotation of the Template
2hzd is annotated as MONOMER
The template structure (2hzd) was solved by NMR and does not contain any quaternary structure annotation
The template is annotated by the number of chains found in the PDB file
Quaternary Structure Modelling of the Target Protein
The quaternary structure can be assumed to be identical
Model was succesfully built as MONOMER.
Template Selection
- Start SMR-Pipeline for:f6b1a0fbbebe746b63d94551858ff7d4 on BC2-cluster at Thu Feb 21 11:06:22
2013
- Analyze BLAST summary ...
- Blast template search was successfull, number of templates selected for modeling: 2
- But still uncovered regions of the target sequence detected, go for: HHSEARCH
FATAL - No A3m found
- Run HHSearch to detect more templates...
FATAL - No templates found in HHSEARCH, strange
- No template with F found
- No template with D found
- No template with B found
- No template with H found
- No template with F found
- No template with D found
- No template with B found
- No template with H found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with B found
- No template with D found
- No template with B found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:2): model based on new templates
- Send 2 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- **************
- building model based on 2hzdA (88-163) was successful
- ***************************************
- building model based on 3kysC (223-439) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:f6b1a0fbbebe746b63d94551858ff7d4 on BC2-cluster at Thu Feb 21 11:07:58
2013
Template Search
| Template Description |
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2hzd: NMR STRUCTURE OF THE DNA-BINDING TEA DOMAIN AND INSIGHTS INTO TEF-1 FUNCTION Solved by: NMR, Identified by BLAST |
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3kys: CRYSTAL STRUCTURE OF HUMAN YAP AND TEAD COMPLEX Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST |
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4eaz: VGLL1-TEAD4 STRUCTURE Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST |
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3jua: STRUCTURAL BASIS OF YAP RECOGNITION BY TEAD4 IN THE HIPPO PATHWAY Solved by: X-RAY, Resolution: 3.00A, Identified by BLAST |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.