SWISS-MODEL Repository - Model Details

Model Overview
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1
459

Sequence
UniProt P30083
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
7tm_2
HRM

Model 3D Structure
Model information:
Modelled residue range: 34 to 129
Based on template: [ 2jod ]  
Sequence Identity [%]: 34%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    34           QHE CEYLQLIEIQ RQQCLEEAQL ENETT----- --GCSKMWDN
2jodA     17    mgsma--hsd g----ifkke qamclekiqr anelmgfnds spgcpgmwdn
                                                                      
TARGET                              h hhhhhhhhhh hhhhh            sss 
2jodA                               h hhhhhhhhhh hhhh        sss  sss 


TARGET    70    LTCWPTTPRG QAVVLDCPLI FQLFAPIHGY N-ISRSCTEE GWSQLEPGPY
2jodA     61    itcwkpahvg emvlvscpel frifnpdqdm gvvsrncted gwsepfp-hy
                                                                      
TARGET           sss                                  sss   sss       
2jodA            sss  sss                             sss   sss       


TARGET    119   HIACGLNDRA S -                                        
2jodA     110   fdacgfdeye set                                        
                                                                      
TARGET                                                                
2jodA

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 03e6c3ef79387a1b3de6e62275b61cf9 on BC2-cluster at Wed Sep  3 18:29:07 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>03e6c3ef79387a1b3de6e62275b61cf9
*****************************************************************************
>2jodA Evalue:3.2E-22 SeqID:34.615 Method:HHSEARCH Type:MODEL
-----*-***************-------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2jodA          34             129            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 03e6c3ef79387a1b3de6e62275b61cf9 on gopt-34.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 18:34:02 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.