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SWISS-MODEL Repository - Model Details

Model Overview

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709

Sequence

UniProt

P32190

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING

P32190: 4932.YHL032C

Domain

Link to: [ InterPro ]

	FGGY_N
	FGGY_C

Model 3D Structure

	Model information:
	Modelled residue range:	147 to 696
	Based on template:	[ 2dpn ]
	Sequence Identity [%]:	37%
	Model date:	2013-02-19
	Revision date:	2013-01-30

Quaternary structure information:	[details]
Template (2dpn): DIMER Model: SINGLE CHAIN

Ligand information:	[details]
Ligands in the template: none. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


TARGET    1                                            FPKP GWVECHPQKL
2dpnA     3     fllaldqgtt ssrailftle grpvavakre frql--ypkp gwvehdp---
                                                                      
TARGET                                                                
2dpnA            sssssss s ssssssss    sssssssss s            sss h   


TARGET    15    LVNVVQCLAS SLLSLQTINS ERVANGLPPY KVICMGIANM RETTILWSRR
2dpnA     48    ----leiwet tlwaarevlr ra---gaeag evlalgitnq rettllwdrk
                                                                      
TARGET                hhhh hhhhhhhhhh h                sss      sssss 
2dpnA               hhhhhh hhhhhhhhhh hh            sssssss     sssss 


TARGET    65    TGKPIVNYGI VWNDTRTIKI ---VRDKWQN TSVDRQLQLR QKTGLPLLST
2dpnA     91    tgkplhn-ai vwqdrrttpl cealrak--- ---gleplfr ertgl-lfdp
                                                                      
TARGET            sss                                 hhhhh hhh       
2dpnA             sss   ss s     hhhh hhhhhh          hhhh    h       


TARGET    112   YFSCSKLRWF LDNEPLCTKA YEENDLMFGT VDTWLIYQLT KQKAFVSDVT
2dpnA     133   yfsgtklvwl lenvpglkar aegggvafgt vdtwliwnlt ggkvhatdpt
                                                                      
TARGET             hhhhhhh h     hhhh hh  sssss  hhhhhhhhh      sss hh
2dpnA              hhhhhhh h     hhhh hh  sssss  hhhhhhhhh      sss hh


TARGET    162   NASRTGFMNL STLKYDNELL EFWGIDKNLI HMPEIVSSSQ YYGDFGIPDW
2dpnA     183   nasrtllfnl htlawdpell ealgipaal- -lpevrpsd- --gdfg----
                                                                      
TARGET          hh               hhhh hhh           sss           ssss
2dpnA           hh               hhhh hhh           sss          s    


TARGET    212   IMEKLHDSPK TVLRDLVKRN LPIQGCLGDQ SASMVGQLAY KPGAAKCTYG
2dpnA     224   ---------- etlpellgap vpirgvlgdq qaalfgqaal gggegkctyg
                                                                      
TARGET          ss   sssss s   hhh          sssh hhhhhh        sssssss
2dpnA                      ss  hhh    sss   sssh hhhhhh        sssssss


TARGET    262   TGCFLLYNTG TKKLISQHGA LTTLAFWFPH LQEYGGQKPE LSKPHFALEG
2dpnA     264   tgaflllntg krpvlsekgl latvaw---- --slgg---- --ratyaleg
                                                                      
TARGET           ssssssss             sssss                     ssssss
2dpnA            ssssssss             ssssss       ss         ssssssss


TARGET    312   SVAVAGAVVQ WLRDNLRLID KSEDVGPIAS TVPDSGGVVF VPAFSGLFAP
2dpnA     302   slfvagaavg wlke-vglir esaevealaa svedtgdvyf vpaftglgap
                                                                      
TARGET          ss    hhhh hhh          hhhhhhhh         ss s         
2dpnA           ss    hhhh hhhh h       hhhhhhhh         ss s         


TARGET    362   YWDPDARATI MGMSQFTTAS HIARAAVEGV CFQARAILKA MSSDAFGEGS
2dpnA     351   ywdpyargtl lgltrgtsra hlaraalegv afqvrdvvla meeea---gv
                                                                      
TARGET                  ss s       hh hhhhhhhhhh hhhhhhhhhh h         
2dpnA                   ss s       hh hhhhhhhhhh hhhhhhhhhh h         


TARGET    412   KDRDFLEEIS DVTYEKSPLS VLAVDGGMSR SNEVMQIQAD ILGPCVKVRR
2dpnA     398   r--------- --------lk vlkadggmaq nrlflkiqad llg--vpvav
                                                                      
TARGET           sssss        sssss    ssss       hhhhhhhhh hh    ssss
2dpnA                                  ssss       hhhhhhhhh hh    ssss


TARGET    462   SPTAECTALG AAIAANMAFK DVNERPLWKD LHDVKKWVFY NGMEKNEQIS
2dpnA     429   pevtettalg aalmagvgag alspedvagr freaerfl-- ----------
                                                                      
TARGET               hhhhh hhhhhhhhh      hhhhhh     sss ss sssss    s
2dpnA           ss   hhhhh hhhhhhhhh      hhhhhh  ssssss              


TARGET    512   PEAHPNLKIF RSESDDAERR KHWKYWEVAV ERSKGWLKD            
2dpnA     467   ----ptmp-- -----egrre alyrrwreav erakgware-           
                                                                      
TARGET          sssssss          hhhh hhhhhhhhhh hhh                  
2dpnA                           hhhhh hhhhhhhhhh hhh

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Template without ligands. 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template 
 2dpn is annotated as DIMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 2dpn.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure 
 Hence, the oligomeric structures of the target and the template can be assumed to be similar (=DIMER) 
 The corresponding reliability score is 0.732 (>0.5 indicates similarity) 
 To build the complex the following chains of the complex has been additionally identified: 2dpnB  
 Unfortunately, we were not able to built the model as DIMER. 
 Thus, the model was built as single chain.

Template Selection

 - Start SMR-Pipeline for:b30ed2e0947e5dcb8ea7b490c09094f9 on BC2-cluster at Mon Feb 18 23:37:00
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with D found
 - No template with A found
 - No template with F found
 - No template with F found
 - No template with F found
 - No template with F found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:3): model based on new templates
 - Send 3 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                  **************************************************************
 - Oligomeric modeling of 2d4wB was not successful, fall back to monomeric modeling
 - building model based on 2d4wB (147-698) was not successful go to next best template
 -                  **************************************************************
 - Oligomeric modeling of 2d4wA was not successful, fall back to monomeric modeling
 - building model based on 2d4wA (147-698) was not successful go to next best template
 -                  **************************************************************
 - Oligomeric modeling of 2dpnA was not successful, fall back to monomeric modeling
 - building model based on 2dpnA (147-696) was successful 
 -       ***
 - building model based on 4htlA (49-78) was successful 
 -      *************************************************************************
 - building model based on 4bc3A (48-691) was not successful go to next best template
 -      *************************************************************************
 - building model based on 4bc4A (48-691) was not successful go to next best template
 -      *************************************************************************
 - building model based on 4bc2B (47-691) was not successful go to next best template
 -      *************************************************************************
 - building model based on 4bc2C (47-691) was not successful go to next best template
 -      *************************************************************************
 - building model based on 4bc2A (47-691) was not successful go to next best template
 -      *************************************************************************
 - building model based on 4bc4C (48-691) was not successful go to next best template
 -      *************************************************************************
 - building model based on 4bc5A (48-691) was not successful go to next best template
 -      *************************************************************************
 - building model based on 4bc4B (47-691) was not successful go to next best template
 -      *************************************************************************
 - building model based on 4bc3C (47-691) was not successful go to next best template
 -      *************************************************************************
 - building model based on 4bc3B (47-691) was not successful go to next best template
 -      *************************************************************************
 - building model based on 4bc5B (47-691) was not successful go to next best template
 -      *************************************************************************
 - building model based on 4bc5C (47-691) was not successful go to next best template
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:b30ed2e0947e5dcb8ea7b490c09094f9 on BC2-cluster at Tue Feb 19 00:22:51
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

4htl: LMO2764 PROTEIN, A PUTATIVE N-ACETYLMANNOSAMINE KINASE, FRMONOCYTOGENES
Solved by: X-RAY, Resolution: 1.64A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

49-78

4htlA

23%

[Model]

4gni: STRUCTURE OF THE SSZ1 ATPASE BOUND TO ATP AND MAGNESIUM
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	575-624	4gniA	18%	>target -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRS-------PTAECTALGAAIAANM--- >4gniA RVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPTHNHASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALIAAAAAADLEVLQLISEPAAAVLAYDASDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQE [Model]
	575-624	4gniB	18%	>target -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSP-------TAECTALGAAIAANM-- >4gniB ERVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPTHNHASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALIAAAAAADLEVLQLISEPAAAVLAYDSDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQ [Model]

4bc5: CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE IN COMPLEX WITH INHIBITOR 5-DEOXY-5-FLUORO-D-XYLULOSE
Solved by: X-RAY, Resolution: 1.98A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

47-691	4bc5B	10%	>target --PLIASIDVGTTSSRCILFNRWGQDVSKHQIEYSTSASKGKIGVSGLRRPSTAPARETPNAGDIKTSGKPIFSAEGYAIQETKFLKIEELDLDFHNEPTLKFPKPGWVECHPQKLLVNVVQCLASSLLSLQTINSERVANGLPPYKVICMGIANMRETTILWSRRTGK--------------------PIVNYGIVWNDTRTIKIVRDKWQNTSVDRQLQLRQKTGLPLLSTYFSCSKLRWFLDNEPLCTKAYEENDLMFGTVDTWLIYQLTKQKAFVSDVTNASRTGFMNLSTLKYDNELLEFWGID-KNLIHMPEIVSSSQYYGDFGIPDWIMEKLHDSPKTVLRDLVKRNLPIQGCLGDQSASMVGQLAYKPGAAKCTYGTGCFLLYNTGTKKLISQHGALTTLAFWFPHLQEYGGQKPELSKPHFALEGSVAVAGAVVQWLRDNLRLIDKSEDVGPIASTV-PDSGGVVFVPAFSGLFAPYWDPDARATIMGMSQFT-TASHIARAAVEGVCFQARAILKAMSSDAFGEGSKDRDFLEEISDVTYEKSPLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSPTAECTALGAAIAANMAFKDVNERPLWKDLHDVKKWVFYNGMEKNEQISPEAHPNLKIFRSESDD-AERRKHWKYWEVAVERSK--- >4bc5B PRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGT------------------------------------------------------QGGVHVHKDGLTVTSPVLMWVQALDIILEKM----------KASGFDFSQVLALSGAGQQHGSIYWKAG-AQQALTSLSPDLRLHQQLQDCFSISD-CPVWMDSSTTAQCRQLEAAVGG--AQALSCLTGSR-AYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLGSY-SPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE--KLSPPVPSCSVVGAISSYYVQRYGF------------PPGCKVVAFTGDNPASLAGMR-LEEGDIAVSLGTSDTLFLWLQ-EPMPALEGHI--FCNP-------------VDSQHYMALLCFKNGSLMREKIRNE-SVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYR-V--------------------MSKTKILATGGASHNREILQVLADVFDA--PVYVIDTANSACVGSAYRAFHGLAGG----TDVPFSEVV---------------KLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQT [Model]
47-691	4bc5C	10%	>target --PLIASIDVGTTSSRCILFNRWGQDVSKHQIEYSTSASKGKIGVSGLRRPSTAPARETPNAGDIKTSGKPIFSAEGYAIQETKFLKIEELDLDFHNEPTLKFPKPGWVECHPQKLLVNVVQCLASSLLSLQTINSERVANGLPPYKVICMGIANMRETTILWSRRTGK--------------------PIVNYGIVWNDTRTIKIVRDKWQNTSVDRQLQLRQKTGLPLLSTYFSCSKLRWFLDNEPLCTKAYEENDLMFGTVDTWLIYQLTKQKAFVSDVTNASRTGFMNLSTLKYDNELLEFWGID-KNLIHMPEIVSSSQYYGDFGIPDWIMEKLHDSPKTVLRDLVKRNLPIQGCLGDQSASMVGQLAYKPGAAKCTYGTGCFLLYNTGTKKLISQHGALTTLAFWFPHLQEYGGQKPELSKPHFALEGSVAVAGAVVQWLRDNLRLIDKSEDVGPIASTV-PDSGGVVFVPAFSGLFAPYWDPDARATIMGMSQFT-TASHIARAAVEGVCFQARAILKAMSSDAFGEGSKDRDFLEEISDVTYEKSPLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSPTAECTALGAAIAANMAFKDVNERPLWKDLHDVKKWVFYNGMEKNEQISPEAHPNLKIFRSESDD-AERRKHWKYWEVAVERSK--- >4bc5C PRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGT------------------------------------------------------QGGVHVHKDGLTVTSPVLMWVQALDIILEKM----------KASGFDFSQVLALSGAGQQHGSIYWKAG-AQQALTSLSPDLRLHQQLQDCFSISD-CPVWMDSSTTAQCRQLEAAVGG--AQALSCLTGSR-AYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLGSY-SPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE--KLSPPVPSCSVVGAISSYYVQRYGF------------PPGCKVVAFTGDNPASLAGMR-LEEGDIAVSLGTSDTLFLWLQ-EPMPALEGHI--FCNP-------------VDSQHYMALLCFKNGSLMREKIRNE-SVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYR-V--------------------MSKTKILATGGASHNREILQVLADVFDA--PVYVIDTANSACVGSAYRAFHGLAGG----TDVPFSEVV---------------KLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQT [Model]
48-691	4bc5A	11%	>target --LIASIDVGTTSSRCILFNRWGQDVSKHQIEYSTSASKGKIGVSGLRRPSTAPARETPNAGDIKTSGKPIFSAEGYAIQETKFLKIEELDLDFHNEPTLKFPKPGWVECHPQKLLVNVVQCLASSLLSLQTINSERVANGLPPYKVICMGIANMRETTILWSRRTG--------------------KPIVNYGIVWNDTRTIKIVRDKWQNTSVDRQLQLRQKTGLPLLSTYFSCSKLRWFLDNEPLCTKAYEENDLMFGTVDTWLIYQLTKQKAFVSDVTNASRTGFMNLSTLKYDNELLEFWGIDKNLIHMPEIVSSSQYYGDFGIPDWIMEKLHDSPKTVLRDLVKRNLPIQGCLGDQSASMVGQLAYKPGAAKCTYGTGCFLLYNTGTKKLISQHGALTTLAFWFPHLQEYGGQKPELSKPHFALEGSVAVAGAVVQWLRDNLRLIDKSEDVGPIASTV-PDSGGVVFVPAFSGLFAPYWDPDARATIMGMSQFT-TASHIARAAVEGVCFQARAILKAMSSDAFGEGSKDRDFLEEISDVTYEKSPLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSPTAECTALGAAIAANMAFKDVNERPLWKD--LHDVKKWVFYNGMEKNEQISPEAHPNLKIFRSESDDAER-RKHWKYWEVAVERSK-- >4bc5A RRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGT------------------------------------------------------QGGVHVHKDGLTVTSPVLMWVQALDIILEKM----------KASGFDFSQVLALSGAGQQHGSIYWKAG-AQQALTSLSPDLRLHQQLQDCFSISD-CPVWMDSSTTAQCRQLEAAVGG--AQALSCLTGSR-AYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLGSYS-PIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE-KLSPPVPSCSVVGAISSYYVQRYGF------------PPGCKVVAFTGDNPASLAGMR-LEEGDIAVSLGTSDTLFLWLQ-EPMPALEGHI--FCNP-------------VDSQHYMALLCFKNGSLMREKIR-NESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGY-R--------------------VMSKTKILATGGASHNREILQVLADVFDA--PVYVIDTANSACVGSAYRAFHGLA------GGTDVPFSEVV---------------KLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQ [Model]

4bc3: CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE
Solved by: X-RAY, Resolution: 1.79A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

47-691	4bc3C	10%	>target --PLIASIDVGTTSSRCILFNRWGQDVSKHQIEYSTSASKGKIGVSGLRRPSTAPARETPNAGDIKTSGKPIFSAEGYAIQETKFLKIEELDLDFHNEPTLKFPKPGWVECHPQKLLVNVVQCLASSLLSLQTINSERVANGLPPYKVICMGIANMRETTILWSRRTGK--------------------PIVNYGIVWNDTRTIKIVRDKWQNTSVDRQLQLRQKTGLPLLSTYFSCSKLRWFLDNEPLCTKAYEENDLMFGTVDTWLIYQLTKQKAFVSDVTNASRTGFMNLSTLKYDNELLEFWGID-KNLIHMPEIVSSSQYYGDFGIPDWIMEKLHDSPKTVLRDLVKRNLPIQGCLGDQSASMVGQLAYKPGAAKCTYGTGCFLLYNTGTKKLISQHGALTTLAFWFPHLQEYGGQKPELSKPHFALEGSVAVAGAVVQWLRDNLRLIDKSEDVGPIASTV-PDSGGVVFVPAFSGLFAPYWDPDARATIMGMSQFT-TASHIARAAVEGVCFQARAILKAMSSDAFGEGSKDRDFLEEISDVTYEKSPLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSPTAECTALGAAIAANMAFKDVNERPLWKDLHDVKKWVFYNGMEKNEQISPEAHPNLKIFRSESDD-AERRKHWKYWEVAVERSK--- >4bc3C PRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGT------------------------------------------------------QGGVHVHKDGLTVTSPVLMWVQALDIILEKM----------KASGFDFSQVLALSGAGQQHGSIYWKAG-AQQALTSLSPDLRLHQQLQDCFSISD-CPVWMDSSTTAQCRQLEAAVGG--AQALSCLTGSR-AYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLGSY-SPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE--KLSPPVPSCSVVGAISSYYVQRYGF------------PPGCKVVAFTGDNPASLAGMR-LEEGDIAVSLGTSDTLFLWLQ-EPMPALEGHI--FCNP-------------VDSQHYMALLCFKNGSLMREKIRNE-SVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYR-V--------------------MSKTKILATGGASHNREILQVLADVFDA--PVYVIDTANSACVGSAYRAFHGLAGG----TDVPFSEVV---------------KLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQT [Model]
47-691	4bc3B	10%	>target --PLIASIDVGTTSSRCILFNRWGQDVSKHQIEYSTSASKGKIGVSGLRRPSTAPARETPNAGDIKTSGKPIFSAEGYAIQETKFLKIEELDLDFHNEPTLKFPKPGWVECHPQKLLVNVVQCLASSLLSLQTINSERVANGLPPYKVICMGIANMRETTILWSRRTGK--------------------PIVNYGIVWNDTRTIKIVRDKWQNTSVDRQLQLRQKTGLPLLSTYFSCSKLRWFLDNEPLCTKAYEENDLMFGTVDTWLIYQLTKQKAFVSDVTNASRTGFMNLSTLKYDNELLEFWGID-KNLIHMPEIVSSSQYYGDFGIPDWIMEKLHDSPKTVLRDLVKRNLPIQGCLGDQSASMVGQLAYKPGAAKCTYGTGCFLLYNTGTKKLISQHGALTTLAFWFPHLQEYGGQKPELSKPHFALEGSVAVAGAVVQWLRDNLRLIDKSEDVGPIASTV-PDSGGVVFVPAFSGLFAPYWDPDARATIMGMSQFT-TASHIARAAVEGVCFQARAILKAMSSDAFGEGSKDRDFLEEISDVTYEKSPLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSPTAECTALGAAIAANMAFKDVNERPLWKDLHDVKKWVFYNGMEKNEQISPEAHPNLKIFRSESDD-AERRKHWKYWEVAVERSK--- >4bc3B PRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGT------------------------------------------------------QGGVHVHKDGLTVTSPVLMWVQALDIILEKM----------KASGFDFSQVLALSGAGQQHGSIYWKAG-AQQALTSLSPDLRLHQQLQDCFSISD-CPVWMDSSTTAQCRQLEAAVGG--AQALSCLTGSR-AYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLGSY-SPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE--KLSPPVPSCSVVGAISSYYVQRYGF------------PPGCKVVAFTGDNPASLAGMR-LEEGDIAVSLGTSDTLFLWLQ-EPMPALEGHI--FCNP-------------VDSQHYMALLCFKNGSLMREKIRNE-SVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYR-V--------------------MSKTKILATGGASHNREILQVLADVFDA--PVYVIDTANSACVGSAYRAFHGLAGG----TDVPFSEVV---------------KLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQT [Model]
48-691	4bc3A	11%	>target --LIASIDVGTTSSRCILFNRWGQDVSKHQIEYSTSASKGKIGVSGLRRPSTAPARETPNAGDIKTSGKPIFSAEGYAIQETKFLKIEELDLDFHNEPTLKFPKPGWVECHPQKLLVNVVQCLASSLLSLQTINSERVANGLPPYKVICMGIANMRETTILWSRRTG--------------------KPIVNYGIVWNDTRTIKIVRDKWQNTSVDRQLQLRQKTGLPLLSTYFSCSKLRWFLDNEPLCTKAYEENDLMFGTVDTWLIYQLTKQKAFVSDVTNASRTGFMNLSTLKYDNELLEFWGIDKNLIHMPEIVSSSQYYGDFGIPDWIMEKLHDSPKTVLRDLVKRNLPIQGCLGDQSASMVGQLAYKPGAAKCTYGTGCFLLYNTGTKKLISQHGALTTLAFWFPHLQEYGGQKPELSKPHFALEGSVAVAGAVVQWLRDNLRLIDKSEDVGPIASTV-PDSGGVVFVPAFSGLFAPYWDPDARATIMGMSQFT-TASHIARAAVEGVCFQARAILKAMSSDAFGEGSKDRDFLEEISDVTYEKSPLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSPTAECTALGAAIAANMAFKDVNERPLWKD--LHDVKKWVFYNGMEKNEQISPEAHPNLKIFRSESDDAER-RKHWKYWEVAVERSK--- >4bc3A RRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGT------------------------------------------------------QGGVHVHKDGLTVTSPVLMWVQALDIILEKM----------KASGFDFSQVLALSGAGQQHGSIYWKAG-AQQALTSLSPDLRLHQQLQDCFSISD-CPVWMDSSTTAQCRQLEAAVGG--AQALSCLTGSR-AYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLGSY-SPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE-KLSPPVPSCSVVGAISSYYVQRYGF------------PPGCKVVAFTGDNPASLAGMR-LEEGDIAVSLGTSDTLFLWLQ-EPMPALEGHIF--CNP-------------VDSQHYMALLC-FKNGSLMREKIRNESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGY-R--------------------VMSKTKILATGGASHNREILQVLADVFDA--PVYVIDTANSACVGSAYRAFHGLA------GGTDVPFSEVV---------------KLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQT [Model]

4bc2: CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE IN COMPLEX WITH XYLULOSE AND ADENOSINE DIPHOSPHATE
Solved by: X-RAY, Resolution: 1.97A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

47-691	4bc2A	10%	>target ---PLIASIDVGTTSSRCILFNRWGQDVSKHQIEYSTSASKGKIGVSGLRRPSTAPARETPNAGDIKTSGKPIFSAEGYAIQETKFLKIEELDLDFHNEPTLKFPKPGWVECHPQKLLVNVVQCLASSLLSLQTINSERVANGLPPYKVICMGIANMRETTILWSRRTGK--------------------PIVNYGIVWNDTRTIKIVRDKWQNTSVDRQLQLRQKTGLPLLSTYFSCSKLRWFLDNEPLCTKAYEENDLMFGTVDTWLIYQLTKQKAFVSDVTNASRTGFMNLSTLKYDNELLEFWGIDKNLIHMPEIVSSSQYYGDFGIPDWIMEKLHDSPKTVLRDLVKRNLPIQGCLGDQSASMVGQLAYKPGAAKCTYGTGCFLLYNTGTKKLISQHGALTTLAFWFPHLQEYGGQKPELSKPHFALEGSVAVAGAVVQWLRDNLRLIDKSEDVGPIASTV-PDSGGVVFVPAFSGLFAPYWDPDARATIMGMSQFTT-ASHIARAAVEGVCFQARAILKAMSSDAFGEGSKDRDFLEEISDVTYEKSPLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSPTAECTALGAAIAANMAFKDVNERPLWKDLHDVKKWVFYNGMEKNEQISPEAHPNLKIFRSESDD-AERRKHWKYWEVAVERSK---- >4bc2A APRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGT------------------------------------------------------QGGVHVHKDGLTVTSPVLMWVQALDIILEKM----------KASGFDFSQVLALSGAGQQHGSIYWKAG-AQQALTSLSPDLRLHQQLQDCFSISD-CPVWMDSSTTAQCRQLEAAVGG--AQALSCLTGSR-AYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLGSY-SPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE-KLSPPVPSCSVVGAISSYYVQRYGF------------PPGCKVVAFTGDNPASLAGMRL-EEGDIAVSLGTSDTLFLWLQ-EPMPALEGHI--FCN-------------PVDSQHYMALLCFKNGSLMREKIRN-ESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYR-V--------------------MSKTKILATGGASHNREILQVLADVFDA--PVYVIDTANSACVGSAYRAFHGLAGG----TDVPFSEVV---------------KLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQTR [Model]
47-691	4bc2B	10%	>target --PLIASIDVGTTSSRCILFNRWGQDVSKHQIEYSTSASKGKIGVSGLRRPSTAPARETPNAGDIKTSGKPIFSAEGYAIQETKFLKIEELDLDFHNEPTLKFPKPGWVECHPQKLLVNVVQCLASSLLSLQTINSERVANGLPPYKVICMGIANMRETTILWSRR-------------------TGKPIVNYGIVWNDTRTIKIVRDKWQNTSVDRQLQLRQKTGLPLLSTYFSCSKLRWFLDNEPLCTKAYEENDLMFGTVDTWLIYQLTKQKAFVSDVTNASRTGFMNLSTLKYDNELLEFWGIDKNLIHMPEIVSSSQYYGDFGIPDWIMEKLHDSPKTVLRDLVKRNLPIQGCLGDQSASMVGQLAYKPGAAKCTYGTGCFLLYNTGTKKLISQHGALTTLAFWFPHLQEYGGQKPELSKPHFALEGSVAVAGAVVQWLRDNLRLIDKSEDVGPIASTV-PDSGGVVFVPAFSGLFAPYWDPDARATIMGMSQFT-TASHIARAAVEGVCFQARAILKAMSSDAFGEGSKDRDFLEEISDVTYEKSPLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSPTAECTALGAAIAANMAFKDVNERPLWKD--LHDVKKWVFYNGMEKNEQISPEAHPNLKIFRSESDDAER-RKHWKYWEVAVERSK---- >4bc2B PRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGT------------------------------------------------------QGGVHVHKDGLTVTSPVLMWVQALDIILEKM----------KASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISD-CPVWMDSSTTAQCRQLEAAVGG--AQALSCLTGSR-AYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLGSY-SPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE-KLSPPVPSCSVVGAISSYYVQRYGF------------PPGCKVVAFTGDNPASLAGMR-LEEGDIAVSLGTSDTLFLWLQ-EPMPALEGHIFC--N-------------PVDSQHYMALLCFKNGSLMREKIRNES-VSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYR-V--------------------MSKTKILATGGASHNREILQVLADVFDA--PVYVIDTANSACVGSAYRAFHGLA------GGTDVPFSEVV---------------KLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQTR [Model]
47-691	4bc2C	10%	>target --PLIASIDVGTTSSRCILFNRWGQDVSKHQIEYSTSASKGKIGVSGLRRPSTAPARETPNAGDIKTSGKPIFSAEGYAIQETKFLKIEELDLDFHNEPTLKFPKPGWVECHPQKLLVNVVQCLASSLLSLQTINSERVANGLPPYKVICMGIANMRETTILWSRR-------------------TGKPIVNYGIVWNDTRTIKIVRDKWQNTSVDRQLQLRQKTGLPLLSTYFSCSKLRWFLDNEPLCTKAYEENDLMFGTVDTWLIYQLTKQKAFVSDVTNASRTGFMNLSTLKYDNELLEFWGIDKNLIHMPEIVSSSQYYGDFGIPDWIMEKLHDSPKTVLRDLVKRNLPIQGCLGDQSASMVGQLAYKPGAAKCTYGTGCFLLYNTGTKKLISQHGALTTLAFWFPHLQEYGGQKPELSKPHFALEGSVAVAGAVVQWLRDNLRLIDKSEDVGPIASTV-PDSGGVVFVPAFSGLFAPYWDPDARATIMGMSQFT-TASHIARAAVEGVCFQARAILKAMSSDAFGEGSKDRDFLEEISDVTYEKSPLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSPTAECTALGAAIAANMAFKDVNERPLWKD--LHDVKKWVFYNGMEKNEQISPEAHPNLKIFRSESDDAER-RKHWKYWEVAVERSK---- >4bc2C PRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGT------------------------------------------------------QGGVHVHKDGLTVTSPVLMWVQALDIILEKM----------KASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISD-CPVWMDSSTTAQCRQLEAAVGG--AQALSCLTGSR-AYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLGSY-SPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE-KLSPPVPSCSVVGAISSYYVQRYGF------------PPGCKVVAFTGDNPASLAGMR-LEEGDIAVSLGTSDTLFLWLQ-EPMPALEGHIFC--N-------------PVDSQHYMALLCFKNGSLMREKIRNES-VSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYR-V--------------------MSKTKILATGGASHNREILQVLADVFDA--PVYVIDTANSACVGSAYRAFHGLA------GGTDVPFSEVV---------------KLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQTR [Model]

4bc4: CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE IN COMPLEX WITH XYLULOSE
Solved by: X-RAY, Resolution: 1.79A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

48-691	4bc4C	11%	>target --LIASIDVGTTSSRCILFNRWGQDVSKHQIEYSTSASKGKIGVSGLRRPSTAPARETPNAGDIKTSGKPIFSAEGYAIQETKFLKIEELDLDFHNEPTLKFPKPGWVECHPQKLLVNVVQCLASSLLSLQTINSERVANGLPPYKVICMGIANMRETTILWSRRTG--------------------KPIVNYGIVWNDTRTIKIVRDKWQNTSVDRQLQLRQKTGLPLLSTYFSCSKLRWFLDNEPLCTKAYEENDLMFGTVDTWLIYQLTKQKAFVSDVTNASRTGFMNLSTLKYDNELLEFWGIDKNLIHMPEIVSSSQYYGDFGIPDWIMEKLHDSPKTVLRDLVKRNLPIQGCLGDQSASMVGQLAYKPGAAKCTYGTGCFLLYNTGTKKLISQHGALTTLAFWFPHLQEYGGQKPELSKPHFALEGSVAVAGAVVQWLRDNLRLIDKSEDVGPIASTV-PDSGGVVFVPAFSGLFAPYWDPDARATIMGMSQFT-TASHIARAAVEGVCFQARAILKAMSSDAFGEGSKDRDFLEEISDVTYEKSPLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSPTAECTALGAAIAANMAFKDVNERPLWKD--LHDVKKWVFYNGMEKNEQISPEAHPNLKIFRSESDDAER-RKHWKYWEVAVERSK-- >4bc4C RRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGT------------------------------------------------------QGGVHVHKDGLTVTSPVLMWVQALDIILEKM----------KASGFDFSQVLALSGAGQQHGSIYWKAG-AQQALTSLSPDLRLHQQLQDCFSISD-CPVWMDSSTTAQCRQLEAAVGG--AQALSCLTGSR-AYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLGSYS-PIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE-KLSPPVPSCSVVGAISSYYVQRYGF------------PPGCKVVAFTGDNPASLAGMR-LEEGDIAVSLGTSDTLFLWLQ-EPMPALEGHI--FCNP-------------VDSQHYMALLCFKNGSLMREKIR-NESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGY-R--------------------VMSKTKILATGGASHNREILQVLADVFDA--PVYVIDTANSACVGSAYRAFHGLA------GGTDVPFSEVV---------------KLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQ [Model]
48-691	4bc4A	11%	>target --LIASIDVGTTSSRCILFNRWGQDVSKHQIEYSTSASKGKIGVSGLRRPSTAPARETPNAGDIKTSGKPIFSAEGYAIQETKFLKIEELDLDFHNEPTLKFPKPGWVECHPQKLLVNVVQCLASSLLSLQTINSERVANGLPPYKVICMGIANMRETTILWSRRTG--------------------KPIVNYGIVWNDTRTIKIVRDKWQNTSVDRQLQLRQKTGLPLLSTYFSCSKLRWFLDNEPLCTKAYEENDLMFGTVDTWLIYQLTKQKAFVSDVTNASRTGFMNLSTLKYDNELLEFWGIDKNLIHMPEIVSSSQYYGDFGIPDWIMEKLHDSPKTVLRDLVKRNLPIQGCLGDQSASMVGQLAYKPGAAKCTYGTGCFLLYNTGTKKLISQHGALTTLAFWFPHLQEYGGQKPELSKPHFALEGSVAVAGAVVQWLRDNLRLIDKSEDVGPIASTV-PDSGGVVFVPAFSGLFAPYWDPDARATIMGMSQFT-TASHIARAAVEGVCFQARAILKAMSSDAFGEGSKDRDFLEEISDVTYEKSPLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSPTAECTALGAAIAANMAFKDVNERPLWKD--LHDVKKWVFYNGMEKNEQISPEAHPNLKIFRSESDDAER-RKHWKYWEVAVERSK--- >4bc4A RRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGT------------------------------------------------------QGGVHVHKDGLTVTSPVLMWVQALDIILEKM----------KASGFDFSQVLALSGAGQQHGSIYWKAG-AQQALTSLSPDLRLHQQLQDCFSISD-CPVWMDSSTTAQCRQLEAAVGG--AQALSCLTGSR-AYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLGSY-SPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE-KLSPPVPSCSVVGAISSYYVQRYGF------------PPGCKVVAFTGDNPASLAGMR-LEEGDIAVSLGTSDTLFLWLQ-EPMPALEGHIF--CNP-------------VDSQHYMALLC-FKNGSLMREKIRNESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGY-R--------------------VMSKTKILATGGASHNREILQVLADVFDA--PVYVIDTANSACVGSAYRAFHGLA------GGTDVPFSEVV---------------KLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQT [Model]
47-691	4bc4B	10%	>target --PLIASIDVGTTSSRCILFNRWGQDVSKHQIEYSTSASKGKIGVSGLRRPSTAPARETPNAGDIKTSGKPIFSAEGYAIQETKFLKIEELDLDFHNEPTLKFPKPGWVECHPQKLLVNVVQCLASSLLSLQTINSERVANGLPPYKVICMGIANMRETTILWSRRTG--------------------KPIVNYGIVWNDTRTIKIVRDKWQNTSVDRQLQLRQKTGLPLLSTYFSCSKLRWFLDNEPLCTKAYEENDLMFGTVDTWLIYQLTKQKAFVSDVTNASRTGFMNLSTLKYDNELLEFWGIDKNLIHMPEIVSSSQYYGDFGIPDWIMEKLHDSPKTVLRDLVKRNLPIQGCLGDQSASMVGQLAYKPGAAKCTYGTGCFLLYNTGTKKLISQHGALTTLAFWFPHLQEYGGQKPELSKPHFALEGSVAVAGAVVQWLRDNLRLIDKSEDVGPIASTV-PDSGGVVFVPAFSGLFAPYWDPDARATIMGMSQFT-TASHIARAAVEGVCFQARAILKAMSSDAFGEGSKDRDFLEEISDVTYEKSPLSVLAVDGGMSRSNEVMQIQADILGPCVKVRRSPTAECTALGAAIAANMAFKDVNERPLWK--DLHDVKKWVFYNGMEKNEQISPEAHPNLKIFRSESDDAER-RKHWKYWEVAVERSK-- >4bc4B PRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGT------------------------------------------------------QGGVHVHKDGLTVTSPVLMWVQALDIILEKM----------KASGFDFSQVLALSGAGQQHGSIYWKAG-AQQALTSLSPDLRLHQQLQDCFSISD-CPVWMDSSTTAQCRQLEAAVGGA--QALSCLTGSR-AYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLGSY-SPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEE-KLSPPVPSCSVVGAISSYYVQRYGF------------PPGCKVVAFTGDNPASLAGMR-LEEGDIAVSLGTSDTLFLWLQ-EPMPALEGHIF--CN-------------PVDSQHYMALLCFKNGSLMREKIRNES-VSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYR---------------------VMSKTKILATGGASHNREILQVLADVFDA--PVYVIDTANSACVGSAYRAFHGLA------GGTDVPFSEVV---------------KLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQ [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.