SWISS-MODEL Repository - Model Details

Model Overview
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1
362

Sequence
UniProt P32347
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P32347: 4932.YDR047W

Domain
Link to: [ InterPro ]
URO-D

Model 3D Structure
Model information:
Modelled residue range: 4 to 358
Based on template: [ 3gw3 ]  
Sequence Identity [%]: 52%
Model date: 2013-05-05
Revision date: 2013-04-01

Quaternary structure information: [details]
Template (3gw3): DIMER
Model: DIMER

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment

TARGET    1        FPAPKND LILRAAKGEK VERPPCWIMR QAGRYLPEYH EVKNNRDFFQ
3gw3_1#1  10    g--fpelknd tflraawgee tdytpvwcmr qagrylpefr etraaqdffs
                                                                      
TARGET                     hhhhhhh                     hhhh hhhh   hhh
3gw3_1#1                   hhhhhhh                     hhhh hhhh   hhh


TARGET    48    TCRDAEIASE ITIQPVRRYR GLIDAAIIFS DILVIPQAMG MRVEMLEGKG
3gw3_1#1  58    tcrspeacce ltlqplrrfp --ldaaiifs dilvvpqalg mevtmvpgkg
                                                                      
TARGET          h   hhhhhh hhhhhhhh        sss     hhhhhhh            
3gw3_1#1        h   hhhhhh hhhhhhhh        sss     hhhhhhh            


TARGET    98    PHFPEPLRNP EDLQTVLDYK VDVLKELDWA FKAITMTRIK LDGEVPLFGF
3gw3_1#1  106   psfpeplree qdlerlrdpe v-vaselgyv fqaitltrqr lagrvpligf
                                                                      
TARGET                     hhhh               hh hhhhhhhhhh      sssss
3gw3_1#1                   hhhh          hh   hh hhhhhhhhhh      sssss


TARGET    148   CGGPWTLMVY MTEGGGSRLF RFAKQWINMY PELSHKLLQK ITDVAVEFLS
3gw3_1#1  155   agapwtlmty mvegggsstm aqakrwlyqr pqashqllri ltdalvpylv
                                                                      
TARGET          ssshhhhhhh hhh        hhhhhhhh    hhhhhhhhh hhhhhhhhhh
3gw3_1#1        ssshhhhhhh hhh        hhhhhhhh    hhhhhhhhh hhhhhhhhhh


TARGET    198   QQVVAGAQIL QVFESWGGEL SSVDFDEFSL PYLRQIAERV PKRLQELGIM
3gw3_1#1  205   gqvvagaqal qlfeshaghl gpqlfnkfal pyirdvakqv karlreag-l
                                                                      
TARGET          hhhhh   ss ssss   hh    hhhhhhhh hhhhhhhhhh hhhhhhh   
3gw3_1#1        hhhhh   ss ssss   hh    hhhhhhhh hhhhhhhhhh hhhhhhh   


TARGET    248   EQIPMIVFAK GSWYALDKLC CSGFDVVSLD WSWDPREAVK INKNRVTLQG
3gw3_1#1  254   apvpmiifak dghfaleela qagyevvgld wtvapkkare cvgntvtlqg
                                                                      
TARGET             sssssss      hhhh      sssss      hhhhhh hh    ssss
3gw3_1#1           sssssss       hhh      sssss      hhhhhh hh    ssss


TARGET    298   NLDPGVMYGS KEVITKKVKQ MIEAFGGGKS RYIVNFGHGT HPFMDPDVIK
3gw3_1#1  304   nldpcalyas eeeigqlvkq mlddf--gph ryianlghgl ypdmdpehvg
                                                                      
TARGET          ss  hhh    hhhhhhhhhh hhhh       sssssss         hhhhh
3gw3_1#1        ss  hhh    hhhhhhhhhh hhhhh      sssssss         hhhhh


TARGET    348   FFLEECHR - -------- F PAPKNDLILR AAKGEKVERP PCWIMRQAGR
3gw3_1#1  352   afvdavhk-h srllrqg--f pelkndtflr aawgeetdyt pvwcmrqagr
                                  *                                   
TARGET          hhhhhhhh                    hhhh hhh                  
3gw3_1#1        hhhhhhhh h hhhhh            hhhh hhh                  


TARGET    387   YLPEYHEVKN NRDFFQTCRD AEIASEITIQ PVRRYRGLID AAIIFSDILV
3gw3_1#1  42    ylpefretra aqdffstcrs peacceltlq plrrfp--ld aaiifsdilv
                                                                      
TARGET            hhhhhhhh    hhhh    hhhhhhhhhh hhhh        sss    hh
3gw3_1#1          hhhhhhhh    hhhh    hhhhhhhhhh hhhh        sss    hh


TARGET    437   IPQAMGMRVE MLEGKGPHFP EPLRNPEDLQ TVLDYKVDVL KELDWAFKAI
3gw3_1#1  90    vpqalgmevt mvpgkgpsfp eplreeqdle rlrdpev-va selgyvfqai
                                                                      
TARGET          hhhhh                       hhhh                hhhhhh
3gw3_1#1        hhhhh                       hhhh          h h   hhhhhh


TARGET    487   TMTRIKLDGE VPLFGFCGGP WTLMVYMTEG GGSRLFRFAK QWINMYPELS
3gw3_1#1  139   tltrqrlagr vpligfagap wtlmtymveg ggsstmaqak rwlyqrpqas
                                                                      
TARGET          hhhhhh      ssssssssh hhhhhhhhh        hhhh hhhh   hhh
3gw3_1#1        hhhhhh      ssssssssh hhhhhhhhh        hhhh hhhh   hhh


TARGET    537   HKLLQKITDV AVEFLSQQVV AGAQILQVFE SWGGELSSVD FDEFSLPYLR
3gw3_1#1  189   hqllriltda lvpylvgqvv agaqalqlfe shaghlgpql fnkfalpyir
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh h   ssssss    hh   hh hhhhhhhhhh
3gw3_1#1        hhhhhhhhhh hhhhhhhhhh h   ssssss    hh   hh hhhhhhhhhh


TARGET    587   QIAERVPKRL QELGIMEQIP MIVFAKGSWY ALDKLCCSGF DVVSLDWSWD
3gw3_1#1  239   dvakqvkarl reag-lapvp miifakdghf aleelaqagy evvgldwtva
                                                                      
TARGET          hhhhhhhhhh hhh      s ssssss      hhhh      sssss     
3gw3_1#1        hhhhhhhhhh hhh      s ssssss       hhh      sssss     


TARGET    637   PREAVKINKN RVTLQGNLDP GVMYGSKEVI TKKVKQMIEA FGGGKSRYIV
3gw3_1#1  288   pkkarecvgn tvtlqgnldp calyaseeei gqlvkqmldd f--gphryia
                                                                      
TARGET          hhhhhhhh     ssssss   hhh   hhhh hhhhhhhhhh       ssss
3gw3_1#1        hhhhhhhh     ssssss   hhh   hhhh hhhhhhhhhh h     ssss


TARGET    687   NFGHGTHPFM DPDVIKFFLE ECHR ----- -                    
3gw3_1#1  336   nlghglypdm dpehvgafvd avhkhsrllr q                    
                                                                      
TARGET          sss         hhhhhhhhh hhhh                            
3gw3_1#1        sss         hhhhhhhhh hhhhhhhhhh                      



Quality


Template's ligands section
Template without ligands.
No ligands were included in the model.


Quaternary Structure Annotation of the Template
3gw3 is annotated as DIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3gw3.pdb1.gz

Quaternary Structure Modelling of the Target Protein
Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure
Hence, the oligomeric structures of the target and the template can be assumed to be similar (=DIMER)
The corresponding reliability score is 0.846 (>0.5 indicates similarity)
Model was succesfully built as DIMER.


Template Selection
 - Start SMR-Pipeline for:2f6dc2226af85102b27ef769b8bc134f on BC2-cluster at Sat May  4 22:56:07
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -  ******************************************************************************
 - building model based on 3gw3A (4-358) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:2f6dc2226af85102b27ef769b8bc134f on BC2-cluster at Sat May  4 23:17:09
2013 




Template Description
Match Chain SeqId

3gw3: HUMAN UROD MUTANT K297N
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 3gw3A 52%
[Model]

2q6z: UROPORPHYRINOGEN DECARBOXYLASE G168R SINGLE MUTANT APO- ENZYME
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 2q6zA 51%
[Model]

1r3s: UROPORPHYRINOGEN DECARBOXYLASE SINGLE MUTANT D86G IN COMPLEX WITH COPROPORPHYRINOGEN-I
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 1r3sA 51%
[Model]

1jpi: PHE232LEU MUTANT OF HUMAN UROD, HUMAN UROPORPHYRINOGEN IIIDECARBOXYLASE
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 1jpiA 51%
[Model]

1jpk: GLY156ASP MUTANT OF HUMAN UROD, HUMAN UROPORPHYRINOGEN IIIDECARBOXYLASE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 1jpkA 51%
[Model]

1r3r: UROPORPHYRINOGEN DECARBOXYLASE WITH MUTATION D86N
Solved by: X-RAY, Resolution: 1.85A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 1r3rA 51%
[Model]

1r3t: UROPORPHYRINOGEN DECARBOXYLASE SINGLE MUTANT D86G IN COMPLEX WITH COPROPORPHYRINOGEN-III
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 1r3tA 51%
[Model]

1r3w: UROPORPHYRINOGEN DECARBOXYLASE Y164F MUTANT IN COMPLEX WITCOPROPORPHYRINOGEN-III
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 1r3wA 51%
[Model]

3gvq: UROD SINGLE-CHAIN DIMER
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 3gvqA 51%
[Model]

1r3y: UROPORPHYRINOGEN DECARBOXYLASE IN COMPLEX WITH COPROPORPHYRINOGEN-III
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 1r3yA 51%
[Model]

3gvv: SINGLE-CHAIN UROD Y164G (GY) MUTATION
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 3gvvA 51%
[Model]

3gvw: SINGLE-CHAIN UROD F217Y (YF) MUTATION
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 3gvwA 51%
[Model]

3gw0: UROD MUTANT G318R
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 3gw0A 51%
[Model]

1uro: UROPORPHYRINOGEN DECARBOXYLASE
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 1uroA 51%
[Model]

2q71: UROPORPHYRINOGEN DECARBOXYLASE G168R SINGLE MUTANT ENZYME IN COMPLEX WITH COPROPORPHYRINOGEN-III
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 2q71A 51%
[Model]

1jph: ILE260THR MUTANT OF HUMAN UROD, HUMAN UROPORPHYRINOGEN IIIDECARBOXYLASE
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 1jphA 51%
[Model]

1r3v: UROPORPHYRINOGEN DECARBOXYLASE SINGLE MUTANT D86E IN COMPLEX WITH COPROPORPHYRINOGEN-I
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 1r3vA 51%
[Model]

1r3q: UROPORPHYRINOGEN DECARBOXYLASE IN COMPLEX WITH COPROPORPHYRINOGEN-I
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 1r3qA 51%
[Model]

3gvr: SINGLE-CHAIN UROD Y164G (GY) MUTATION
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-362 3gvrA 51%
[Model]

3cyv: CRYSTAL STRUCTURE OF UROPORPHYRINOGEN DECARBOXYLASE FROM SHIGELLA FLEXINERI: NEW INSIGHTS INTO ITS CATALYTIC MECHANISM
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-362 3cyvA 38%
[Model]

1j93: CRYSTAL STRUCTURE AND SUBSTRATE BINDING MODELING OF THE UROPORPHYRINOGEN-III DECARBOXYLASE FROM NICOTIANA TABACUMIMPLICATIONS FOR THE CATALYTIC MECHANISM
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

9-359 1j93A 36%
[Model]

2eja: CRYSTAL STRUCTURE OF UROPORPHYRINOGEN DECARBOXYLASE FROM AQUIFEX AEOLICUS
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-361 2ejaA 33%
[Model]
7-360 2ejaB 34%
[Model]

4exq: CRYSTAL STRUCTURE OF UROPORPHYRINOGEN DECARBOXYLASE (UPD) BURKHOLDERIA THAILANDENSIS E264
Solved by: X-RAY, Resolution: 1.65A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-362 4exqA 34%
[Model]

2inf: CRYSTAL STRUCTURE OF UROPORPHYRINOGEN DECARBOXYLASE FROM BACILLUS SUBTILIS
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-362 2infB 31%
[Model]
7-362 2infA 31%
[Model]
7-362 2infC 31%
[Model]
7-362 2infD 31%
[Model]

4ay7: METHYLTRANSFERASE FROM METHANOSARCINA MAZEI
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-361 4ay7A 17%
[Model]
6-361 4ay7B 17%
[Model]

4ay8: SEMET-DERIVATIVE OF A METHYLTRANSFERASE FROM M. MAZEI
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-360 4ay8A 17%
[Model]
1-360 4ay8B 17%
[Model]

3ppg: CRYSTAL STRUCTURE OF THE CANDIDA ALBICANS METHIONINE SYNTHSURFACE ENTROPY REDUCTION, ALANINE VARIANT WITH ZINC
Solved by: X-RAY, Resolution: 1.98A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

140-347 3ppgA 15%
[Model]
145-360 3ppgA 13%
[Model]

3ppf: CRYSTAL STRUCTURE OF THE CANDIDA ALBICANS METHIONINE SYNTHSURFACE ENTROPY REDUCTION, ALANINE VARIANT WITHOUT ZINC
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

131-359 3ppfA 12%
[Model]
145-347 3ppfA 15%
[Model]

3ppc: CRYSTAL STRUCTURE OF THE CANDIDA ALBICANS METHIONINE SYNTHSURFACE ENTROPY REDUCTION, TYROSINE VARIANT WITH ZINC
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

131-347 3ppcA 14%
[Model]
132-361 3ppcA 14%
[Model]
132-361 3ppcB 13%
[Model]
145-347 3ppcB 15%
[Model]

3pph: CRYSTAL STRUCTURE OF THE CANDIDA ALBICANS METHIONINE SYNTHSURFACE ENTROPY REDUCTION, THREONINE VARIANT
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

131-362 3pphA 14%
[Model]
132-347 3pphA 14%
[Model]
131-347 3pphB 14%
[Model]
131-361 3pphB 13%
[Model]

1xdj: CRYSTAL STRUCTURE OF T. MARITIMA COBALAMIN-INDEPENDENT METHIONINE SYNTHASE COMPLEXED WITH ZN2+ AND HOMOCYSTEINE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

131-361 1xdjA 12%
[Model]
132-347 1xdjA 10%
[Model]
132-359 1xdjB 13%
[Model]
132-341 1xdjB 11%
[Model]

1u1h: A. THALIANA COBALAMINE INDEPENDENT METHIONINE SYNTHASE
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

131-362 1u1hA 13%
[Model]
130-346 1u1hA 11%
[Model]

1u22: A. THALIANA COBALAMINE INDEPENDENT METHIONINE SYNTHASE
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

131-362 1u22A 13%
[Model]
130-346 1u22A 11%
[Model]

1u1u: A. THALIANA COBALAMINE INDEPENDENT METHIONINE SYNTHASE
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

131-362 1u1uA 13%
[Model]
130-346 1u1uA 11%
[Model]

1u1j: A. THALIANA COBALAMINE INDEPENDENT METHIONINE SYNTHASE
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

131-362 1u1jA 13%
[Model]
130-346 1u1jA 11%
[Model]

3rpd: THE STRUCTURE OF A B12-INDEPENDENT METHIONINE SYNTHASE FROSP. W3-18-1 IN COMPLEX WITH SELENOMETHIONINE.
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

131-361 3rpdA 11%
[Model]
131-361 3rpdB 11%
[Model]

1t7l: CRYSTAL STRUCTURE OF COBALAMIN-INDEPENDENT METHIONINE SYNTHASE FROM T. MARITIMA
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

140-347 1t7lA 11%
[Model]
47-361 1t7lA 10%
[Model]
132-362 1t7lB 13%
[Model]
140-347 1t7lB 11%
[Model]

1xpg: CRYSTAL STRUCTURE OF T. MARITIMA COBALAMIN-INDEPENDENT METHIONINE SYNTHASE COMPLEXED WITH ZN2+ AND METHYLTETRAHYDROFOLATE
Solved by: X-RAY, Resolution: 2.59A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

132-347 1xpgA 11%
[Model]
47-361 1xpgA 10%
[Model]
132-347 1xpgB 11%
[Model]
47-361 1xpgB 10%
[Model]

3bq6: CRYSTAL STRUCTURE OF T. MARITIMA COBALAMIN-INDEPENDENT METHIONINE SYNTHASE COMPLEXED WITH ZN2+ (MONOCLINIC)
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

131-359 3bq6A 13%
[Model]
132-347 3bq6A 10%
[Model]
140-347 3bq6B 11%
[Model]
46-362 3bq6B 10%
[Model]

2nq5: CRYSTAL STRUCTURE OF METHYLTRANSFERASE FROM STREPTOCOCCUS MUTANS
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

131-362 2nq5A 13%
[Model]
131-341 2nq5A 10%
[Model]

3l7r: CRYSTAL STRUCTURE OF METE FROM STREPTOCOCCUS MUTANS
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

130-341 3l7rA 10%
[Model]
46-362 3l7rA 11%
[Model]

1xr2: CRYSTAL STRUCTURE OF OXIDIZED T. MARITIMA COBALAMIN- INDEPENDENT METHIONINE SYNTHASE COMPLEXED WITH METHYLTETRAHYDROFOLATE
Solved by: X-RAY, Resolution: 2.35A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

140-341 1xr2A 10%
[Model]
26-359 1xr2A 10%
[Model]
132-362 1xr2B 12%
[Model]
131-346 1xr2B 9%
[Model]

3t0c: CRYSTAL STRUCTURE OF STREPTOCOCCUS MUTANS METE COMPLEXED W
Solved by: X-RAY, Resolution: 2.19A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

130-347 3t0cA 9%
[Model]
46-361 3t0cA 12%
[Model]

3bq5: CRYSTAL STRUCTURE OF T. MARITIMA COBALAMIN-INDEPENDENT METHIONINE SYNTHASE COMPLEXED WITH ZN2+ AND HOMOCYSTEINE (MONOCLINIC)
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

132-359 3bq5A 12%
[Model]
131-347 3bq5A 9%
[Model]
16-359 3bq5B 10%
[Model]
140-347 3bq5B 11%
[Model]

1ypx: CRYSTAL STRUCTURE OF THE PUTATIVE VITAMIN-B12 INDEPENDENT METHIONINE SYNTHASE FROM LISTERIA MONOCYTOGENES, NORTHEASSTRUCTURAL GENOMICS TARGET LMR13
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

131-360 1ypxA 8%
[Model]

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.