SWISS-MODEL Repository - Model Details

Model Overview
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1
225

Sequence
UniProt P33779
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
cNMP_binding
HTH_Crp_2

Model 3D Structure
Model information:
Modelled residue range: 27 to 221
Based on template: [ 2h6b ]  
Sequence Identity [%]: 22%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    27                                        VETFDRS KTIFFPGDPA
2h6bA     3     veglgkdfcg aiipdnffpi eklrnytqmg l--irdfakg savimpgeei
                                                                      
TARGET                                               sss    ssssss    
2h6bA              sssss   sssss       hhh       s  ssss    ssssss    


TARGET    44    ERVYFLLKGA VKLSRVYEAG EEITVALLRE NSVFGVLSLV TGQRSDRFYH
2h6bA     51    tsmiflvegk ikldiifedg sekllyyagg nsligklypt gn-----niy
                                                                      
TARGET           ssssss  s sssssss    ssssssss    sssss            sss
2h6bA             sssss  s sssssss    ssssssss    sss              sss


TARGET    94    AVAFTPVELL SAPIEQVEQA LKEHPDLSLL MLQGLSSRIL QTEMMIETLA
2h6bA     96    atameptrtc wfsekslrtv frtdedmife ifknyltkva yyarqvaemn
                                                                      
TARGET          ssss  ssss ss hhhhhhh hh   hhhhh hhhhhhhhhh hhhhhhh   
2h6bA           ssss  ssss ss hhhhhhh hh   hhhhh hhhhhhhhhh hhhhhhh  s


TARGET    144   HRDMGSRLVS FLLILCRDFG VPAPDGIRID LKLSHQAIAE AIGSTRVTVT
2h6bA     146   tynptirilr lfyelcssqg krvgdtyeit mplsqksige itgvhhvtvs
                                                                      
TARGET              hhhhhh hhhhhhhh   sss  sssss s   hhhhhh hh   hhhhh
2h6bA           ss  hhhhhh hhhhhhhhh  sss  sssss s   hhhhhh hh   hhhhh


TARGET    194   RLLGDLREGN MISITKKKIT VHNPVALS - ---------- ------    
2h6bA     196   rvlaclkren ildkkknkii vynlgelkhl seqtsvdkla aaldhh    
                                                                      
TARGET          hhhhhhhhh  sssss ssss ss hhhhh                        
2h6bA           hhhhhhhhh  sssss ssss ss hhhhhhh h    ssshh hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 73e3816a1d46ca55da62467f634434b5 on BC2-cluster at Sun Aug 31 02:40:04 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>73e3816a1d46ca55da62467f634434b5
***************************************************************************
>2h6bA Evalue:3.9E-29 SeqID:22.051 Method:HHSEARCH Type:MODEL
---------*******************--********************************************-


TEMPLATE ID    START          STOP           METHOD         STATUS         
2h6bA          27             221            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 73e3816a1d46ca55da62467f634434b5 on gopt-59.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 02:41:59 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.