SWISS-MODEL Repository
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
| UniProt | P34578 |
Database: TrEMBL (Unreviewed)  |
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Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2013-01-30. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
1o7fA 13 aewiacldkr plerssedvd iiftrlkgvk afekfhpnll rqiclcgyye
1o7fA hhhhhh hhhhh hhhhhh hhhh hhhhh sss
1o7fA 63 nlekgitlfr qgdigtnwya vlagsldvkv setsshqdav tictlgigta
1o7fA ss sss sssss ss ssssss s sssss ss
1o7fA 113 fgesildntp rhativtres sellrieqed fkalwekyrq ymagllappy
1o7fA s hh sssss sssssssshh hhhhhhh
TARGET 1 EKQIRDSGGI LHRKMLTDNH QVIRDITTEH TRVQNCMIGA
1o7fA 163 gvmetvps-- ekilr-agki lriailsrap hmirdrkyhl ktyrqccvgt
TARGET hh hhhhhhhh sss sss sssh
1o7fA hhhh hhhh hhhhhhhh sss sss sssh
TARGET 41 EMIDWLLTLF VSTSTTCSSL SRIQMSAIWQ VLLNNGLISH IDGEHQFLDK
1o7fA 222 elvdwmiq-- ---qtscvh- srtqavgmwq vlledgvlnh vdqerhfqdk
TARGET hhhhhhh hhhhhhhh hhhhh ssss s
1o7fA hhhhhhhh hhhhhhhh hhhhh ssss s
TARGET 91 TNSYYRWVQ- -----QFRSR NKVAPSIEEV SKSITLLSSV APETLFLMIV
1o7fA 266 y-lfyrfldd eredaplpte eekkecdeel qdtmlllsqm gpdahmrmil
TARGET ssssss hhhhhhh hhhhhhhhhh hhhhhhhhhh
1o7fA ssssss hhhhhhh hhhhhhhhhh hhhhhhhhhh
TARGET 135 SKPGFERSPE ELEVVYEELT FIKALSHLST MVKRQLSNFV KVEQYVHAGS
1o7fA 315 rkppgqrtvd dleiiydell hikalshlst tvkrelagvl ifeshakggt
TARGET hh hhhhhhhhhh h hhhhhhh ssssss s
1o7fA hh hhhhhhhhhh h hhhhhhh ssssss s
TARGET 185 VVFRQGEIGV YWYIVLKGAV EVNVNGKIV- CLLREGDDFG KLALVNDLPR
1o7fA 365 vlfnqgeegt swyiilkgsv nvviygkgvv ctlhegddfg klalvndapr
TARGET ss s ssssss ss ssss sss sss sss hh
1o7fA ss s ssssss ss ssss sss sss sss hh
TARGET 234 AATIVTYEDD SMFLVVDKHH FNQILHQVEA N
1o7fA 415 aasivlredn chflrvdked fnrilrdvea n-
TARGET sssss s sssssssshh hhhhhh
1o7fA sssss s sssssssshh hhhhhh
Template's ligands section
Template without ligands.
No ligands were included in the model.
Quaternary Structure Annotation of the Template
1o7f is annotated as MONOMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 1o7f.pdb1.gz
Quaternary Structure Modelling of the Target Protein
Analysis of evolutionary and family specific aspects revealed non-conservation of the oligomeric structure
Hence, the oligomeric structures of the target and the template cannot be assumed to be similar (=MONOMER)
The target structure was calculated as SINGLE CHAIN
The corresponding reliability score is 0.432 (>0.5 indicates similarity)
Template Selection
- Start SMR-Pipeline for:fd9b77bcc29f1f2920f21d0c24af8af6 on BC2-cluster at Mon Feb 18 07:28:09
2013
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
FATAL - No A3m found
- Run HHSearch to detect more templates...
FATAL - No templates found in HHSEARCH, strange
- No template with A found
- No template with Q found
- No template with R found
- No template with Q found
- No template with R found
- No template with Q found
- No template with R found
- No template with A found
- No template with B found
- No template with R found
- No template with R found
- No template with R found
- No template with R found
- No template with A found
- No template with A found
- No template with A found
- No template with Q found
- No template with R found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:3): model based on new templates
- Send 3 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- ********************
- building model based on 1o7fA (218-481) was successful
- ****************************************************
- building model based on 3cf6E (349-1027) was not successful go to next best template
- ***************************************************************
- building model based on 4f7zA (218-1028) was not successful go to next best template
- ***************************************************************
- building model based on 2byvE (218-1028) was not successful go to next best template
- *******
- building model based on 2dhzA (695-784) was successful
- ******************
- building model based on 2ijeS (798-1028) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:fd9b77bcc29f1f2920f21d0c24af8af6 on BC2-cluster at Mon Feb 18 07:34:55
2013
Template Search
no data available!
Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.