SWISS-MODEL Repository - Model Details

Model Overview
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1
423

Sequence
UniProt P34999
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
7tm_2
HRM

Model 3D Structure
Model information:
Modelled residue range: 21 to 114
Based on template: [ 2jod ]  
Sequence Identity [%]: 34%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    21       LGHVHPE CDFITQLRED ERTCLQAADR M------ANS SSGCPRTWDG
2jodA     17    m--gsmahsd g----ifkke qamclekiqr anelmgfnds spgcpgmwdn
                                                                      
TARGET                              h hhhhhhhhhh             sss  sss 
2jodA                               h hhhhhhhhhh hhhh        sss  sss 


TARGET    62    LLCWPTAGPG EWVTLPCPAF FSHFSSEPGA --LKRDCTTT GWSEPFPPYP
2jodA     61    itcwkpahvg emvlvscpel frifnpdqdm gvvsrncted gwsepfphyf
                                                                      
TARGET           sss  sss                             sss   sss       
2jodA            sss  sss                             sss   sss       


TARGET    110   EACPV ---- --                                         
2jodA     111   dacgfdeyes et                                         
                                                                      
TARGET                                                                
2jodA

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: ec2585b2d6226c9c4703ce475519eac7 on BC2-cluster at Sat Aug 30 07:53:38 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>ec2585b2d6226c9c4703ce475519eac7
*************************************************************************************
>2jodA Evalue:1.2E-30 SeqID:34.314 Method:HHSEARCH Type:MODEL
----*******************--------------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2jodA          21             114            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: ec2585b2d6226c9c4703ce475519eac7 on gopt-77.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 07:56:38 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.