SWISS-MODEL Repository - Model Details

Model Overview
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1
925

Sequence
UniProt P35409
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
7tm_1
LRR_8
LRR_8

Model 3D Structure
Model information:
Modelled residue range: 35 to 259
Based on template: [ 1ozn ]  
Sequence Identity [%]: 23%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    35          KCSC NP--KGMVSC --FELQEFPP LATFPRNTTT LHVSFSGEIS
1oznA     26    pcpg--acvc ynepkvttsc pqqglqavpv --gipaasqr iflhgnrish
                                                                      
TARGET                  ss s    sssss        hhh hhh     ss sssss   ss
1oznA                   ss s    sssss ss                 ss sssss   ss


TARGET    75    IPSDILQHLE KLKYLTLNNN KIKNIAKFRV KNGYSSLITL SYTHN-IIET
1oznA     72    vpaasfracr nltilwlhsn vlaridaaaf -tglalleql dlsdnaqlrs
                                                                      
TARGET          s            sssssss     sss            sss ssss      
1oznA           s            sssssss     sss            sss ssss      


TARGET    124   IENGAFDDLQ QLTQLDLSNN RLKEFP--IF NKTSSVTKLY LRGNPGITKL
1oznA     121   vdpatfhglg rlhtlhldrc glqelgpglf rglaalqyly lqdn-alqal
                                                                      
TARGET             hh        sssssss                   ssss sss       
1oznA              hh        sssssss                   ssss sss       


TARGET    172   PRQSLGNLPS LENLFMERTG IQEIPAGIFR QNTRLINLYF NKTKALERIN
1oznA     170   pddtfrdlgn lthlflhgnr issvperafr glhsldrlll hqnr-vahvh
                                                                      
TARGET                      sssssss                   sssss ss        
1oznA                       sssssss                   sssss ss        


TARGET    222   EDAFDEDSSL KTLVLDETSV TSLPS---RG LKNLHFLSLK D --------
1oznA     219   phafrdlgrl mtlylfannl salptealap lralqylrln dnpwvcdcra
                                                                      
TARGET                     sssssss                    sssss           
1oznA                      sssssss         hhhh      ssssss           


TARGET          ---------- ---------- ---------- ---------- -         
1oznA     269   rplwawlqkf rgsssevpcs lpqrlagrdl krlaandlqg c         
                                                                      
TARGET                                                                
1oznA            hhhhhhhh    sss sss         sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: c4f17d8626e5dd9b35a0a59ac5315bf1 on BC2-cluster at Sat Aug 30 00:59:17 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>c4f17d8626e5dd9b35a0a59ac5315bf1
******************************************************************************
>2z73A Evalue:3E-26 SeqID:19.753 Method:HHSEARCH Type:MODEL
------------------------------------------*************************-----------
>1oznA Evalue:7.7E-19 SeqID:23.830 Method:HHSEARCH Type:MODEL
---*******************--------------------------------------------------------
>1f88A Evalue:1.4E-25 SeqID:18.991 Method:HHSEARCH Type:MODEL
----------------------------------------***************************-----------
>2z66A Evalue:2E-13 SeqID:23.551 Method:HHSEARCH Type:MODEL
---*********************------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2z73A          508            809            HHSEARCH       BUILT          
1oznA          35             259            HHSEARCH       BUILT          
1f88A          479            807            HHSEARCH       BUILT          
2z66A          34             290            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: c4f17d8626e5dd9b35a0a59ac5315bf1 on gopt-59.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 01:07:49 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.