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SWISS-MODEL Repository - Model Details

Model Overview

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327

Sequence

UniProt

P35550

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING

P35550: 10090.ENSMUSP000

Domain

Link to: [ InterPro ]

Fibrillarin

Model 3D Structure

	Model information:
	Modelled residue range:	93 to 321
	Based on template:	[ 2ipx ]
	Sequence Identity [%]:	96%
	Model date:	2013-02-23
	Revision date:	2013-01-30

Quaternary structure information:	[details]
Template (2ipx): MONOMER Model: MONOMER

Ligand information:	[details]
Ligands in the template: CA: 2, MTA: 1. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


TARGET    1       MVEPHRHE GVFICRGKED ALVTKNLVPG ESVYGEKRVS ISEGDDKIEY
2ipx_1#9  89      xvephrhe gvficr---- -lvtknlvpg esvygekrvs is----kiey
                                                                      
TARGET              sss     sss        sssss           ssss s      sss
2ipx_1#9            sss     sss        sssss           ssss s      sss


TARGET    49    RAWNPFRSKL AAAILGGVDQ IHIKPGAKVL YLGAASGTTV SHVSDIVGPD
2ipx_1#9  136   rawnpfrskl aaailggvdq ihikpgakvl ylgaasgttv shvsdivgpd
                                                                      
TARGET          sss     hh hhhhhh           ssss sss    hhh hhhhhhh   
2ipx_1#9        sss     hh hhhhhh           ssss sss    hhh hhhhhhh   


TARGET    99    GLVYAVEFSH RSGRDLINLA KKRTNIIPVI EDARHPHKYR MLIAMVDVIF
2ipx_1#9  186   glvyavefsh rsgrdlinla kkrtniipvi edarhphkyr xliaxvdvif
                                                                      
TARGET           ssssss  h hhhhhhhhhh hh  ssssss s                ssss
2ipx_1#9         ssssss  h hhhhhhhhhh hh  ssssss s                ssss


TARGET    149   ADVAQPDQTR IVALNAHTFL RNGGHFVISI KANCIDSTAS AEAVFASEVK
2ipx_1#9  236   advaqpdqtr ivalnahtfl rngghfvisi kancidstas aeavfasevk
                                                                      
TARGET          ss     hhh hhhhhhhh     ssssssss sshhh      hhhhhhhhhh
2ipx_1#9        ss     hhh hhhhhhhh     ssssssss sshhh      hhhhhhhhhh


TARGET    199   KMQQENMKPQ EQLTLEPYER DHAVVVGVYR P                    
2ipx_1#9  286   kxqqenxkpq eqltlepyer dhavvvgvyr p-                   
                                                                      
TARGET          hhh  sssss sssss      ssssssssss                      
2ipx_1#9        hhhh sssss sssss      ssssssssss

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Ligands in the template: CA: 2, MTA: 1. 
Ligands in the template that will be assessed: CA1, CA2. 
Model's ligands section 
CA1 
The ligand binds less than 3 template residues. 
Given the properties calculated previously, the ligand z.CA1 will not be included in the final model. 
CA1: conservation:False, RMSD:False, included: False 
 
CA2 
The ligand binds less than 3 template residues. 
Given the properties calculated previously, the ligand z.CA2 will not be included in the final model. 
CA2: conservation:False, RMSD:False, included: False 
 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template 
 2ipx is annotated as MONOMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 2ipx.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure 
 Hence, the oligomeric structures of the target and the template can be assumed to be similar (=MONOMER) 
 The corresponding reliability score is 0.71 (>0.5 indicates similarity) 
 Model was succesfully built as MONOMER.

Template Selection

 - Start SMR-Pipeline for:1083d0557538869502273fa17161f25e on BC2-cluster at Sat Feb 23 04:34:28
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with A found
 - No template with A found
 - No template with C found
 - No template with C found
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with K found
 - No template with L found
 - No template with K found
 - No template with L found
 - No template with A found
 - No template with F found
 - No template with E found
 - No template with H found
 - No template with B found
 - No template with C found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with G found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with C found
 - No template with E found
 - No template with G found
 - No template with C found
 - No template with B found
 - No template with A found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                        ********************************************************
 - building model based on 2ipxA (93-321) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:1083d0557538869502273fa17161f25e on BC2-cluster at Sat Feb 23 04:36:07
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

2ipx: HUMAN FIBRILLARIN
Solved by: X-RAY, Resolution: 1.82A, Identified by BLAST
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

93-321

2ipxA

96%

4hg2: THE STRUCTURE OF A PUTATIVE TYPE II METHYLTRANSFERASE FROMANAEROMYXOBACTER DEHALOGENANS.
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	146-272	4hg2A	16%	>target -----FRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQ--PDQTRIVALNAHTFLRNGGHFVISIKA--------------------------------------------------------------------------------------------------------------------- >4hg2A AFRPRYPRALFRWLGEV-----APARGDALDCGCGSGQASLGLAEFFE---RVHAVDPGE----AQIRQALRHPRVTYAVAPAEDT---GLPPASVDVAIAAQAMHWFDLD-RFWAELRRVARPGAVFAAVTYGLTRVDPEVDAVVDRLYHGLLARDWPPERVHVESGYRTLPFPFPELEAPPLEIEERWPMDAFLGYLGTWSAVTAHRRRTGADPLAEIAPALRAAWGTPERPLRVTWPIAIRAGRILPH [Model]
	164-274	4hg2B	19%	>target ------------------KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQ--PDQTRIVALNAHTFLRNGGHFVISIKANC-------------------------------------------------------------------------------------------------------------------- >4hg2B AFRPRYPRALFRWLGEVAPARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGE----AQIRQALRHPRVTYAVAPAEDTGL---PPASVDVAIAAQAMHWFDLDR-FWAELRRVARPGAVFAAVTYGLTRVDPEVDAVVDRLYHGLLARDWPPERVHVESGYRTLPFPFPELEAPPLEIEERWPMDAFLGYLGTWSAVTAHRRRTGADPLAEIAPALRAAWGTPERPLRVTWPIAIRAGRILPHA [Model]

3ou6: DHPI-SAM COMPLEX
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

150-321	3ou6A	14%	>target ------------------------------LAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVI-----FADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDS---------------TASAEA------VF---ASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRP >3ou6A TSHGLIESQLSYYRARASEYDATFVPYMDSAAPAALERLR--AGNIRGDVLELASGTGYWTRHLSGL-AD--RVTALDGSAEM----IAEAGRHGLDNVEFRQQDLFDWTP----DRQWDAVFFAHWLAHVPDD-RFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWS-CSVDEVHPG---FLYATC--RP [Model]
150-321	3ou6D	14%	>target ------------------------------LAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVI-----FADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDS---------------TASAEA------VF---ASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRP >3ou6D TSHGLIESQLSYYRARASEYDATFVPYMDSAAPAALERLR--AGNIRGDVLELASGTGYWTRHLSGL-AD--RVTALDGSAEM----IAEAGRHGLDNVEFRQQDLFDWTP----DRQWDAVFFAHWLAHVPDD-RFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWS-CSVDEVHPG---FLYATC--RP [Model]
147-321	3ou6B	14%	>target --------------------------RSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIF-----ADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA------------------SAEA---V---FASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRP >3ou6B HGLIESQLSYYRARASEYDATFVPYMDSAA-PAALERL--RAGNIRGDVLELASGTGYWTRHLSGLA-D--RVTALDGSAEM----IAEAGRHGLDNVEFRQQDLFDWTPD----RQWDAVFFAHWLAHVPD-DRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC-SVDEVHPG---FLYATC--RP [Model]
151-270	3ou6C	17%	>target ---------------------------AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIFADVAQ---P-DQTRIVALNAHTFLRNGGHFVISI-------------------------------------------------------------------- >3ou6C LIESQLSYYRARASEYDATFVPYMDSAAPAALERL--RAGNIRGDVLELASGTGYWTRHLSGLA-D--RVTALDGSAEM----IAEAGRHGLDNVEFRQQDLFDWTP----DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDEVHPGFLYATCR [Model]

4htf: CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE-DEPENDENT METHYLFROM ESCHERICHIA COLI IN COMPLEX WITH S-ADENOSYLMETHIONIN
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	159-307	4htfB	14%	>target --------------------------------------DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK---RTNIIPVIEDARHPHKYRMLIAMVDVIFA-----DVAQPDQTRIVALNAHTFLRNGGHFVISIKANC--------------------IDSTASAEAVFASEVKKMQQENMKPQEQLTLEP--------------------------------------------- >4htfB MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMG-PQKLRVLDAGGGEGQTAIKMAER-GH--QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH--LETPVDLILFHAVLEWVADPRS---VLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMSPDYPRDP----TQVYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDCYEALLELETRYCRQEPYITLGRYIHVTARKP [Model]
	159-305	4htfA	13%	>target -------------------------------DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK------RTNIIPVIEDARHPHKYRMLI-AMVDVIFAD-VAQ--PDQTRIVALNAHTFLRNGGHFVISIKANCI------------------------DSTASAEAVFASEVKKMQQENMKPQEQLTL----------------------------------------------- >4htfA DIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMG-PQKLRVLDAGGGEGQTAIKMAER-GH--QVILCDLSAQM----IDRAKQAAEAGVSDNMQFIHCAAQDV---ASHLETPVDLILFHAVLEWVADPRS-VLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKLSPDYPRDPTQ----VYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDYEALLELETRYCRQEPYITLGRYIHVTARKPQ [Model]

3ou7: DHPI-SAM-HEP COMPLEX
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

149-321	3ou7A	12%	>target ------------------------------KLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVI-----FADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCID----ST--------------ASAEAVF------ASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRP >3ou7A TTSHGLIESQLSYYRARASEYDATFVPYMDSAAPAALERLR--AGNIRGDVLELASGTGYWTRHLSGLA-D--RVTALDGSAEMI----AEAGRHGLDNVEFRQQDLFDWTPD----RQWDAVFFAHWLAHVPD-DRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC-SVDEVHPG---FLYATC--RP [Model]
150-321	3ou7D	14%	>target ------------------------------LAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVI-----FADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDS---------------TASAEA------VF---ASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRP >3ou7D TSHGLIESQLSYYRARASEYDATFVPYMDSAAPAALERLR--AGNIRGDVLELASGTGYWTRHLSGL-AD--RVTALDGSAEM----IAEAGRHGLDNVEFRQQDLFDWTP----DRQWDAVFFAHWLAHVPDD-RFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWS-CSVDEVHPG---FLYATC--RP [Model]
145-321	3ou7C	13%	>target -------------------------PFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--RTNIIPVIEDARHPHKYRMLIAMVDVIF-----ADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDS---------------TAS-AE--AV------FASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRP >3ou7C SHGLIESQLSYYRARASEYDATFVPYMDSAAPA-ALERL--RAGNIRGDVLELASGTGYWTRHLSGL-AD--RVTALDGSAEM----IAEAGRHGLDNVEFRQQDLFDWTP----DRQWDAVFFAHWLAHVPD-DRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC-SVDEVHPG---FLYATC--RP [Model]
162-324	3ou7B	12%	>target --------------------------------------HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--RTNIIPVIEDARHPHKYRMLIAMVDVIFA-----DVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA------------------SAEA------VFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPK >3ou7B HGLIESQLSYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGL-AD--RVTALDGSAEM----IAEAGRHGLDNVEFRQQDLFDWTP----DRQWDAVFFAHWLAHVPD-DRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC-SVDEVHPG---FLYAT--CRPGPR [Model]

3ou2: DHPI-SAH COMPLEX STRUCTURE
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

141-323

3ou2A

13%

3hm2: CRYSTAL STRUCTURE OF PUTATIVE PRECORRIN-6Y C5,15- METHYLTRANSFERASE TARGETED DOMAIN FROM CORYNEBACTERIUM DIPHTHERIAE
Solved by: X-RAY, Resolution: 2.21A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

150-301	3hm2A	16%	>target -------LAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQE---------------------------- >3hm2A GQLTKQHVRALAISAL---APKPHETLWDIGGGSGSIAIEWLR-STPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFD--DVPDNPDVIFIGGLTAPG---VFAAAWKRLPVGGRLVANA------VTVES---EQMLWALRKQFGGTISSFAISHEHTVGSFITMKPALPVHQWTVVK [Model]
151-301	3hm2B	16%	>target --------AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAK--KRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQE----------------------------- >3hm2B GQLTKQHVRALAISA---LAPKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA--FDDVPDNPDVIFIGLTAPGVFAA----AWKRLPVGGRLVANA--VTVES-------EQMLWALRKQFGGTISSFAISHEHTVGSFITMKPALPVHQWTVVKA [Model]
159-312	3hm2D	13%	>target -------------DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--RTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTL--EPYERDH---------------- >3hm2D GQLTKQHVRALAISALAPKPHETLWDISGSIAIEWL------RSQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR--AFDDVPDNPDVIFIGGGL-TAPGVF-AAAWKRLPVGGRLVANA------VTVESEQMLW---ALRKQFGGTIS-SFAISHEHTGSFITMKPALPVHQWTVVKA [Model]
158-305	3hm2C	13%	>target ------------VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAK--KRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTL-------------------------- >3hm2C GQLTKQHVRALAISALAPKPHETLWDIGSIA----IEWL-RSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAP--RAFDDVPDNPDVIFIGGGL-TAPGV-FAAAWKRLPVGGRLVANAV--TVE-------SEQMLWALRKQFGGTIS-SFAISHEHTVGSFITMKPALPVHQWTVVKA [Model]
159-305	3hm2F	15%	>target -------------DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAK--KRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTL-------------------------- >3hm2F GQLTKQHVRALAISALAPKPHETLWDIGGS----IAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGA--PRAFDDVPDNPDVIFILTA----PGV-FAAAWKRLPVGGRLVANA--VTVE-------SEQMLWALRKQFGGTIS-SFAISHEHTVGSFITMKPALPVHQWTVVKA [Model]
163-301	3hm2H	16%	>target ---------------IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--RTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQE--------------------------- >3hm2H GQLTKQHVRALAISALAPKETLWDIGGGSIA-I--EWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR--AFDDVPDNPDVIFIGGGL-TAPGVF-AAAWKRLPVGGRLVANA------VTVESE---QMLWALRKQFGGTISSFAISHEHGSFITMKPALPVHQWTVVKA [Model]
150-301	3hm2G	16%	>target -------LAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--RTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQE----------------------------- >3hm2G GQLTKQHVRALAISA-----LAPKETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFD--DVPDNPDVIFIGGGL-TAPG-VFAAAWKRLPVGGRLVANA------VTVESE---QMLWALRKQFGGTISSFAISHEHTVGSFITMKPALPVHQWTVVKA [Model]
152-305	3hm2E	15%	>target ---------AAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAK--KRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTL-------------------------- >3hm2E GQLTKQHVRALAIS---ALAPKPHETLWDIGGS--IAI--EWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAP--RAFDDVPDNPDVIFIGGGL-TAPG-VFAAAWKRLPVGGRLVANAVT--V----ESEQ---MLWALRKQFGGTIS-SFAISHEHTVGSFITMKPALPVHQWTVVKA [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.