SWISS-MODEL Repository

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SWISS-MODEL Repository - Model Details

Model Overview

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551

Sequence

UniProt

P36113

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING

P36113: 4932.YKR017C

Domain

Link to: [ InterPro ]

	zf-C3HC4
	IBR
	IBR

Model 3D Structure

	Model information:
	Modelled residue range:	333 to 387
	Based on template:	[ 1wd2 ]
	Sequence Identity [%]:	61%
	Model date:	2013-05-04
	Revision date:	2013-04-01

Quaternary structure information:	[details]
Template (1wd2): MONOMER Model: MONOMER

Ligand information:	[details]
Ligands in the template: ZN: 1. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment


TARGET    1       WVLSHTKE CPKCSVNIEK NGGCNHMVCS SC--KYEFCW ICEGPWAPHG
1wd2_1#3  11      wiaantke cpkchvtiek dggcnhmvcr nqnckaefcw vclgpwephg
                                                                      
TARGET                                                            hhh 
1wd2_1#3                                            hh            hhh 


TARGET    47    KNFFQCTMY  --                                         
1wd2_1#3  59    sawyncnryn ef                                         
                                                                      
TARGET                                                                
1wd2_1#3

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Ligands in the template: ZN: 1. 
Ligands in the template that will be assessed: ZN1. 
Model's ligands section 
ZN1 
Not all the residues interacting with the ligand are completely conserved between model and template. 
No RMSD calculation will be performed. 
Given the properties calculated previously, the ligand z.ZN1 will not be included in the final model. 
ZN1: conservation:False, RMSD:False, included: False 
 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template 
 1wd2 is annotated as MONOMER 
 The template structure (1wd2) was solved by NMR and does not contain any quaternary structure annotation 
 The template is annotated by the number of chains found in the PDB file 
      
 
Quaternary Structure Modelling of the Target Protein 
 The quaternary structure can be assumed to be identical 
 Model was succesfully built as MONOMER.

Template Selection

 - Start SMR-Pipeline for:c9151541a62101601d6f6bafa069402d on BC2-cluster at Sat May  4 19:25:52
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with D found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:5): model based on new templates
 - Send 5 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                 ********
 - building model based on 1wd2A (333-387) was successful 
 -                          ********
 - building model based on 4aycA (175-229) was successful 
 -                          ***************
 - building model based on 1rmdA (173-276) was successful 
 -                                           **************
 - building model based on 4ap4A (292-386) was successful 
 -                                   ************
 - building model based on 2jmoA (235-315) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:c9151541a62101601d6f6bafa069402d on BC2-cluster at Sat May  4 19:39:33
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

1wd2: SOLUTION STRUCTURE OF THE C-TERMINAL RING FROM A RING-IBR-RING (TRIAD) MOTIF
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	333-387	1wd2A	61%	>target WVLSHTKECPKCSVNIEKNGGCNHMVC--SSCKYEFCWICEGPWAPHGKNFFQCTMY--- >1wd2A WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNEF [Model]
	333-389	1wd2A	59%	>target WVLSHTKECPKCSVNIEKNGGCNHMVCS--SCKYEFCWICEGPWAPHGKNFFQCTMYKN- >1wd2A WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNEF [Model]

4ayc: RNF8 RING DOMAIN STRUCTURE
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	175-232	4aycB	28%	>target ----------------------------------------NDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDI----------------------------------- >4aycB KDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAV-TLNCAHSFCSYCINEWMKRK------IECPICRKDIKSKTYSLVLDNINKMVNNLSSEVKERRIVLIRERKAKRLF [Model]
	175-229	4aycA	29%	>target ---------------------------------------------------NDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKN------------------------------------- >4aycA LGSMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAV-TLNCAHSFCSYCINEWMKRK------IECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERKAKR [Model]

4epo: CRYSTAL STRUCTURE OF RNF8 BOUND TO THE UBC13/MMS2 HETERODI
Solved by: X-RAY, Resolution: 4.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

175-236	4epoH	25%	>target ---------------------------------------------------------NDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKN--EDIDKVM------------------------ >4epoH PGFQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEA-VTLNCAHSFCSYCINEWMKR----K--IECPICRKDILVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF [Model]
175-228	4epoG	26%	>target ------------------------------------------------------NDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALK---------------------------------- >4epoG QEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAV-TLNCAHSFCSYCINEWMKR----K--IECPICRKDILVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF [Model]
175-236	4epoL	25%	>target ---------------------------------------------------------NDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKN--EDIDKVM------------------------ >4epoL PGFQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEA-VTLNCAHSFCSYCINEWMKR----K--IECPICRKDILVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF [Model]
175-228	4epoK	26%	>target ------------------------------------------------------NDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALK---------------------------------- >4epoK QEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAV-TLNCAHSFCSYCINEWMKR----K--IECPICRKDILVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF [Model]
174-231	4epoC	28%	>target ------KNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNED------------------------------- >4epoC HMNDVLENELQCIICSEYFIEAV-TLNCAHSFCSYCINEWMKRK------IECPICRKDILVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF [Model]

2ecv: SOLUTION STRUCTURE OF THE ZINC FINGER, C3HC4 TYPE (RING FINGER) DOMAIN OF TRIPARTITE MOTIF-CONTAINING PROTEIN 5
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

175-232

2ecvA

26%

3ztg: SOLUTION STRUCTURE OF THE RING FINGER-LIKE DOMAIN OF RETINOBLASTOMA BINDING PROTEIN-6 (RBBP6)
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	173-227	3ztgB	24%	>target ---------FKNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLAL-------------------------------- >3ztgB GPLGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE----SDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYTKRLRKQ [Model]
	173-227	3ztgA	24%	>target ---------FKNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLAL-------------------------------- >3ztgA GPLGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE----SDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYTKRLRKQ [Model]

2yur: SOLUTION STRUCTURE OF THE RING FINGER OF HUMAN RETINOBLASTOMA-BINDING PROTEIN 6
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

172-227

2yurA

23%

2egp: SOLUTION STRUCTURE OF THE RING-FINGER DOMAIN FROM HUMAN TRIPARTITE MOTIF PROTEIN 34
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

174-232

2egpA

23%

2ea6: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE HUMAN RING FINGER PROTEIN 4
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

172-229

2ea6A

23%

2xeu: RING DOMAIN
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

176-234

2xeuA

23%

3ng2: CRYSTAL STRUCTURE OF THE RNF4 RING DOMAIN DIMER
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	174-234	3ng2B	22%	>target ---KNDFTCIICCDKKDT------ETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDIDK--- >3ng2B LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------NTCPTCRKKINHKRYHPIYI [Model]
	174-234	3ng2A	22%	>target --KNDFTCIICCDKKDT------ETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDIDK--- >3ng2A RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------NTCPTCRKKINHKRYHPIYI [Model]

2y43: RAD18 UBIQUITIN LIGASE RING DOMAIN STRUCTURE
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	174-233	2y43A	22%	>target ------------KNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDID---------------------- >2y43A RWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK------TQCPTCCVTVTEPDLKNNRILDELVKSLNFARNHLLQF [Model]
	174-232	2y43B	22%	>target -------------KNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDI---------------------- >2y43B SRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK------TQCPTCCVTVTEPDLKNNRILDELVKSLNFARNHLLQ [Model]

2yu4: SOLUTION STRUCTURE OF THE SP-RING DOMAIN IN NON-SMC ELEMEN2 HOMOLOG (MMS21, S. CEREVISIAE)
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

175-231

2yu4A

22%

1z6u: NP95-LIKE RING FINGER PROTEIN ISOFORM B [HOMO SAPIENS]
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	176-230	1z6uA	22%	>target ------------------------------------------DFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNE------------------------ >1z6uA EAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPV-TTECFHNVCKDCLQRSFKAQV-----FSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYSKGR [Model]
	176-230	1z6uB	22%	>target ------------------------------------------DFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNE------------------------ >1z6uB EAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPV-TTECFHNVCKDCLQRSFKAQV-----FSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYSKGR [Model]

2ysj: SOLUTION STRUCTURE OF THE RING DOMAIN (1-56) FROM TRIPARTITE MOTIF-CONTAINING PROTEIN 31
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

174-223

2ysjA

22%

2ecj: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE HUMAN TRIPARTITE MOTIF-CONTAINING PROTEIN 39
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

174-223

2ecjA

22%

2jmd: SOLUTION STRUCTURE OF THE RING DOMAIN OF HUMAN TRAF6
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

175-232

2jmdA

21%

2ecn: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE HUMAN RING FINGER PROTEIN 141
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

173-229

2ecnA

21%

2ct7: SOLUTION STRUCTURE OF THE IBR DOMAIN OF THE RING FINGER PROTEIN 31 PROTEIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	237-324	2ct7A	12%	>target --GHPSSSKLMDSSIKSFVQKHNRNYKWCPFADCKSIVHLRDTSSLPEYTRLHYSPFVKC-NSFHRFCFNCGFEV---HSPADCKITTAWVKKA------ >2ct7A GSSGSSGALFHKKLTEGVLMR-DPKFLWCA--QCSFGFIYERE-----------QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMNSGPSSG [Model]
	335-389	2ct7A	21%	>target ---------------------LSHTKECPKCSVNIEKNGGCNHMVCSSCKYEFCWICEGPWAP-HGKNFFQCTMYKN----------- >2ct7A GSSGSSGALFHKKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRG--RSCEDFQNWKRMNSGPSSG [Model]

2l0b: SOLUTION NMR STRUCTURE OF ZINC FINGER DOMAIN OF E3 UBIQUITLIGASE PRAJA-1 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GECONSORTIUM (NESG) TARGET HR4710B
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

176-229

2l0bA

21%

3rpg: BMI1/RING1B-UBCH5C COMPLEX STRUCTURE
Solved by: X-RAY, Resolution: 2.65A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	174-229	3rpgB	20%	>target ----------KNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKN--------------------------------------- >3rpgB RTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET------SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAH [Model]
	173-229	3rpgC	21%	>target -----------------------------FKNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKN-------------------- >3rpgC TWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG---N--KECPTCRKKLVSKRSLRPDPNFDALISKIYPS [Model]

2h0d: STRUCTURE OF A BMI-1-RING1B POLYCOMB GROUP UBIQUITIN LIGASCOMPLEX
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	174-229	2h0dB	21%	>target -------------------------------KNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKN------------------ >2h0dB KTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGN-----KECPTCRKKLVSKRSLRPDPNFDALISKIY [Model]
	175-229	2h0dA	20%	>target ---------NDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKN--------------------------------------- >2h0dA TRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS------KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAH [Model]

3lrq: CRYSTAL STRUCTURE OF THE U-BOX DOMAIN OF HUMAN UBIQUITIN- PROTEIN LIGASE (E3), NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR4604D.
Solved by: X-RAY, Resolution: 2.29A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

175-233	3lrqA	20%	>target -----------NDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDID----------------- >3lrqA HMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTE----Q-RAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQL [Model]
175-233	3lrqD	20%	>target ----------NDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDID-------------------- >3lrqD MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ----R-AQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSL [Model]
174-232	3lrqB	20%	>target ----------KNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDI---------------- >3lrqB HMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTE----Q-RAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL [Model]
175-233	3lrqC	20%	>target ----------NDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDID------------------ >3lrqC MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ-----RAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLC [Model]

3fl2: CRYSTAL STRUCTURE OF THE RING DOMAIN OF THE E3 UBIQUITIN- PROTEIN LIGASE UHRF1
Solved by: X-RAY, Resolution: 1.75A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

176-230

3fl2A

20%

2eci: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE HUMAN TNF RECEPTOR-ASSOCIATED FACTOR 6 PROTEIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

172-232

2eciA

20%

1g25: SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE HUMAN TFIIH MAT1 SUBUNIT
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

175-234

1g25A

20%

2ysl: SOLUTION STRUCTURE OF THE RING DOMAIN (1-66) FROM TRIPARTITE MOTIF-CONTAINING PROTEIN 31
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

173-233

2yslA

20%

2ckl: RING1B-BMI1 E3 CATALYTIC DOMAIN STRUCTURE
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	174-228	2cklB	22%	>target ---------------------------KNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALK------------------- >2cklB KTWELSLYELQRTPQEAITDGLEIVSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG-----NKECPTCRKKLVSKRSLRPDPNFDALISKIY [Model]
	174-229	2cklA	20%	>target -------KNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKN----------------------------------------- >2cklA RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET----S--KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAHPS [Model]

1x4j: SOLUTION STRUCTURE OF RING FINGER IN RING FINGER PROTEIN 3
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

174-229

1x4jA

19%

2djb: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE HUMAN POLYCOMGROUP RING FINGER PROTEIN 6
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

173-229

2djbA

19%

2csy: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE ZINC FINGER PROTEIN 183-LIKE 1
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

176-227

2csyA

19%

1rmd: RAG1 DIMERIZATION DOMAIN
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

173-276

1rmdA

19%

2ct2: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE TRIPARTITE MOTIF PROTEIN 32
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

173-236

2ct2A

19%

3hcs: CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF TRAF6
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	173-276	3hcsB	18%	>target ----------FKNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDIDKVMGHPSSSKLMDSSIKSFVQKHNRNYKWCPFADCKSIVHLRD--------------------------------------------------------------- >3hcsB QGYDVEFDPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLENQLF---P--------DNFAKREILS---LMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPL [Model]
	173-276	3hcsA	18%	>target ----------FKNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDIDKVMGHPSSSKLMDSSIKSFVQKHNRNYKWCPFADCKSIVHLRD--------------------------------------------------------------- >3hcsA QGYDVEFDPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLENQLF---P--------DNFAKREILS---LMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPL [Model]

1jm7: SOLUTION STRUCTURE OF THE BRCA1/BARD1 RING-DOMAIN HETERODIMER
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	176-232	1jm7A	18%	>target --------------------DFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDI------------------------------ >1jm7A MDLSALRVEEVQNVINAMQKILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQK---KGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYAN [Model]
	173-233	1jm7B	18%	>target ------------------FKNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDID-------------------------- >1jm7B MEPDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT--------GCPVCYTPAWIQDLKINRQLDSMIQLCSKLRNLLHDNELSD [Model]

2d8t: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE HUMAN RING FINGER PROTEIN 146
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

173-233

2d8tA

18%

4ap4: RNF4 - UBCH5A - UBIQUITIN HETEROTRIMERIC COMPLEX
Solved by: X-RAY, Resolution: 2.21A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	176-229	4ap4A	25%	>target --DFTCIICCDKKDT------ETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKN------------------------------------------------------------------------- >4ap4A SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN------TCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI [Model]
	292-386	4ap4A	18%	>target -----------------------VKCNSFHRFCFNCGFEV-HSPADCKITTAWVKKARKESEILNWVLSHTKECPKCSVNIEK-NGGCNHMVCSSCKYEFCWICEGPWAPHGKNFFQCTM------------ >4ap4A SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH---KRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI [Model]

3hct: CRYSTAL STRUCTURE OF TRAF6 IN COMPLEX WITH UBC13 IN THE P1SPACE GROUP
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

173-275

3hctA

17%

2jmo: IBR DOMAIN OF HUMAN PARKIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	340-386	2jmoA	17%	>target ----------------------------ECPKCSVNIEKNGGCNHMVCSS-----CKYEFCWICEGPWAPHGKNFFQCTM----- >2jmoA GHMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY--HEG---ECSAVFEAS [Model]
	235-315	2jmoA	15%	>target -VMGHPSSSKLMDSSIKSFVQKHNRNYKWCPFADCKSIVHLRDTSSLPEYTRLHYSPFVKC------NSFHRFCFNCGFEVHSPADCK------ >2jmoA GHMGEEQYNRYQQYGAEECVLQMG-GV-LCPRPGCGAGLLPEPD-----------QRKVTCEGGNGLGCGFAFCRECKEAYHEG-ECSAVFEAS [Model]

3l11: CRYSTAL STRUCTURE OF THE RING DOMAIN OF RNF168
Solved by: X-RAY, Resolution: 2.12A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

171-229

3l11A

17%

2ecw: SOLUTION STRUCTURE OF THE ZINC FINGER, C3HC4 TYPE (RING FINGER) DOMAIN TRIPARTITE MOTIF PROTEIN 30
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

175-232

2ecwA

17%

2ecy: SOLUTION STRUCTURE OF THE ZINC FINGER, C3HC4 TYPE (RING FINGER)" DOMAIN OF TNF RECEPTOR-ASSOCIATED FACTOR 3
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

173-232

2ecyA

17%

3knv: CRYSTAL STRUCTURE OF THE RING AND FIRST ZINC FINGER DOMAINOF TRAF2
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

173-276

3knvA

17%

3hcu: CRYSTAL STRUCTURE OF TRAF6 IN COMPLEX WITH UBC13 IN THE C2SPACE GROUP
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	173-275	3hcuA	18%	>target ----------FKNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDIDKVMGHPSSSKLMDSSIKSFVQKHNRNYKWCPFADCKSIVHLR------------- >3hcuA QGYDVEFDPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRD----A-GHKCPVDNEILLENQLF---P--------DNFAKREILS---LMVKCPNEGCLHKMELRHLEDHQAHCEFAL [Model]
	173-275	3hcuC	17%	>target ----------FKNDFTCIICCDKKDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDIDKVMGHPSSSKLMDSSIKSFVQKHNRNYKWCPFADCKSIVHLR----------- >3hcuC QGYDVEFDPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRD----A-GHKCPVDNEILLENQLF---PD--------NFAKREILS---LMVKCPNEGCLHKMELRHLEDHQAHCEF [Model]

1wim: SOLUTION STRUCTURE OF THE RING FINGER DOMAIN OF THE HUMAN UBCM4-INTERACTING PROTEIN 4
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

175-255

1wimA

16%

2ect: SOLUTION STRUCTURE OF THE ZINC FINGER, C3HC4 TYPE (RING FINGER) DOMAIN OF RING FINGER PROTEIN 126
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

174-229

2ectA

16%

1e4u: N-TERMINAL RING FINGER DOMAIN OF HUMAN NOT-4
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

174-232

1e4uA

15%

2ep4: SOLUTION STRUCTURE OF RING FINGER FROM HUMAN RING FINGER PROTEIN 24
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

174-229

2ep4A

14%

1t1h: NMR SOLUTION STRUCTURE OF THE U BOX DOMAIN FROM ATPUB14, AARMADILLO REPEAT CONTAINING PROTEIN FROM ARABIDOPSIS THALIANA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

174-256

1t1hA

12%

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.