SWISS-MODEL Repository - Model Details

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1
926

Sequence
UniProt P37934
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Homeobox
AalphaY_MDB

Model 3D Structure
Model information:
Modelled residue range: 149 to 214
Based on template: [ 1b72 ]  
Sequence Identity [%]: 28%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    149     KPRPKFHS EYTPLLELYF ---HFNAYPT FADRRMLAEK TGMQTRQITV
1b72B     235     rkrrnfnk qateilneyf yshlsnpyps eeakeelakk cgitvsqvsn
                                                                      
TARGET                   h hhhhhhhh              hhhhhhhhhh h   hhhhhh
1b72B                    h hhhhhhhhhh hh         hhhhhhhhhh h   hhhhhh


TARGET    194   WFQNHRRRAK GPLPRMAPTD K ---                           
1b72B     283   wfgnkriryk knigkfqeea niyaa                           
                                                                      
TARGET          hhhhhhhhhh       hhhh h                               
1b72B           hhhhhhhhhh       hhhh hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 85058d6657e43afc1bce8dfeee634fb2 on BC2-cluster at Sat Aug 30 20:16:30 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>85058d6657e43afc1bce8dfeee634fb2
******************************************************************************
>1b72B Evalue:5.8E-12 SeqID:28.986 Method:HHSEARCH Type:MODEL
------------******------------------------------------------------------------
>1s7eA Evalue:1.3E-09 SeqID:22.989 Method:HHSEARCH Type:MODEL
----------*******-------------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1b72B          149            214            HHSEARCH       BUILT          
1s7eA          120            199            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 85058d6657e43afc1bce8dfeee634fb2 on gopt-23.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 20:26:18 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.