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Model Overview
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1
70

Sequence
UniProt P38040
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P38040: 7227.FBpp0087727

Domain
Link to: [ InterPro ]
G-gamma

Model 3D Structure
Model information:
Modelled residue range: 7 to 64
Based on template: [ 3v5w ]  
Sequence Identity [%]: 48%
Model date: 2013-05-07
Revision date: 2013-04-01

Quaternary structure information: [details]
Template (3v5w): HETERO TRIMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment 

TARGET    1       SLQQQRVV VEQLRREAAI DRQTISESCA KMMKYITEHE QEDYLLTGFT
3v5wG     8       siaqarkl veqlkmeani drikvskaaa dlmayceaha kedplltpvp
                                                                      
TARGET             hhhhhhh hhhhhhhh       hhhhhh hhhhhhhh             
3v5wG               hhhhhh hhhhhhhh       hhhhhh hhhhhhhh             


TARGET    49    SQKVNPFREK                                            
3v5wG     56    ase-npfrek -                                          
                                                                      
TARGET                                                                
3v5wG

Quality 


Template's ligands section 
Template without ligands. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 3v5w is annotated as HETERO TRIMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 3v5w.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 3v5w_1

Template Selection 
 - Start SMR-Pipeline for:627d0571f5ab0a8e04f41c2751adb8e5 on BC2-cluster at Tue May  7 06:13:15
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - No A3m found

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - No template with A found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with Q found
 - No template with A found
 - No template with B found
 - No template with Q found
 - No template with A found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with D found
 - No template with B found
 - No template with P found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with R found
 - No template with N found
 - No template with A found
 - No template with B found
 - No template with R found
 - No template with N found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with P found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with C found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -         ******************************************************************
 - building model based on 3v5wG (7-64) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:627d0571f5ab0a8e04f41c2751adb8e5 on BC2-cluster at Tue May  7 06:15:38
2013


Template Description
Match Chain SeqId

3v5w: HUMAN G PROTEIN-COUPLED RECEPTOR KINASE 2 IN COMPLEX WITH GBETAGAMMA SUBUNITS AND PAROXETINE
Solved by: X-RAY, Resolution: 2.07A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-64 3v5wG 48%
[Model]

1xhm: THE CRYSTAL STRUCTURE OF A BIOLOGICALLY ACTIVE PEPTIDE (SIGK) BOUND TO A G PROTEIN BETA:GAMMA HETERODIMER
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-51 1xhmB 48%
[Model]

1omw: CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN G PROTEIN-COUPLEDRECEPTOR KINASE 2 AND HETEROTRIMERIC G PROTEIN BETA 1 ANDGAMMA 2 SUBUNITS
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-67 1omwG 46%
[Model]

3krw: HUMAN GRK2 IN COMPLEX WITH GBETGAMMA SUBUNITS AND BALANOL (SOAK)
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-67 3krwG 46%
[Model]

3krx: HUMAN GRK2 IN COMPLEX WITH GBETGAMMA SUBUNITS AND BALANOL (CO-CRYSTAL)
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-67 3krxG 46%
[Model]

3cik: HUMAN GRK2 IN COMPLEX WITH GBETAGAMMA SUBUNITS
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-67 3cikG 46%
[Model]

3pvu: BOVINE GRK2 IN COMPLEX WITH GBETAGAMMA SUBUNITS AND A SELEINHIBITOR (CMPD101)
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-67 3pvuG 46%
[Model]

3pvw: BOVINE GRK2 IN COMPLEX WITH GBETAGAMMA SUBUNITS AND A SELEINHIBITOR (CMPD103A)
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-67 3pvwG 46%
[Model]

3psc: BOVINE GRK2 IN COMPLEX WITH GBETAGAMMA SUBUNITS
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-67 3pscG 46%
[Model]

1gp2: G PROTEIN HETEROTRIMER GI_ALPHA_1 BETA_1 GAMMA_2 WITH GDP BOUND
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-61 1gp2G 45%
[Model]

3sn6: CRYSTAL STRUCTURE OF THE BETA2 ADRENERGIC RECEPTOR-GS PROT
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-62 3sn6G 45%
[Model]

3ah8: STRUCTURE OF HETEROTRIMERIC G PROTEIN GALPHA-Q BETA GAMMA WITH AN INHIBITOR YM-254890
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

10-60 3ah8G 45%
[Model]

2bcj: CRYSTAL STRUCTURE OF G PROTEIN-COUPLED RECEPTOR KINASE 2 ICOMPLEX WITH GALPHA-Q AND GBETAGAMMA SUBUNITS
Solved by: X-RAY, Resolution: 3.06A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-66 2bcjG 45%
[Model]

1gg2: G PROTEIN HETEROTRIMER MUTANT GI_ALPHA_1(G203A) BETA_1 GAMMA_2 WITH GDP BOUND
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-61 1gg2G 45%
[Model]

3uzs: STRUCTURE OF THE C13.28 RNA APTAMER BOUND TO THE G PROTEINRECEPTOR KINASE 2-HETEROTRIMERIC G PROTEIN BETA 1 AND GAMCOMPLEX
Solved by: X-RAY, Resolution: 4.52A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-67 3uzsG 44%
[Model]

1got: HETEROTRIMERIC COMPLEX OF A GT-ALPHA/GI-ALPHA CHIMERA AND THE GT-BETA-GAMMA SUBUNITS
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-63 1gotG 31%
[Model]

1a0r: HETEROTRIMERIC COMPLEX OF PHOSDUCIN/TRANSDUCIN BETA-GAMMA
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-63 1a0rG 31%
[Model]

1b9y: STRUCTURAL ANALYSIS OF PHOSDUCIN AND ITS PHOSPHORYLATION- REGULATED INTERACTION WITH TRANSDUCIN BETA-GAMMA
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-65 1b9yB 30%
[Model]

1tbg: BETA-GAMMA DIMER OF THE HETEROTRIMERIC G-PROTEIN TRANSDUCI
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-65 1tbgE 30%
[Model]
6-62 1tbgH 30%
[Model]
6-62 1tbgG 30%
[Model]
6-62 1tbgF 30%
[Model]

2trc: PHOSDUCIN/TRANSDUCIN BETA-GAMMA COMPLEX
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-65 2trcG 30%
[Model]

1b9x: STRUCTURAL ANALYSIS OF PHOSDUCIN AND ITS PHOSPHORYLATION- REGULATED INTERACTION WITH TRANSDUCIN
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-65 1b9xB 30%
[Model]

2pbi: THE MULTIFUNCTIONAL NATURE OF GBETA5/RGS9 REVEALED FROM ITCRYSTAL STRUCTURE
Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-63 2pbiA 15%
[Model]
4-63 2pbiC 15%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.