SWISS-MODEL Repository - Model Details

Model Overview
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70

Sequence
UniProt P38040 Guanine nucleotide-binding protein subunit gamma-1
Drosophila melanogaster (Fruit fly).
Database: Swiss-Prot (Reviewed) manually annotated and reviewed

STRING
P38040: 7227.FBpp0087727

Domain
Link to: [ InterPro ]
G-gamma

Model 3D Structure
Model information:
Modelled residue range: 7 to 64
Based on template: [ 3v5w ]  
Sequence Identity [%]: 48%
Model date: 2014-04-11
Revision date: 2014-04-08

Quaternary structure information: [details]
Template (3v5w): HETERO TRIMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment

TARGET    1       SLQQQRVV VEQLRREAAI DRQTISESCA KMMKYITEHE QEDYLLTGFT
3v5wG     8       siaqarkl veqlkmeani drikvskaaa dlmayceaha kedplltpvp
                                                                      
TARGET             hhhhhhh hhhhhhhh       hhhhhh hhhhhhhh             
3v5wG               hhhhhh hhhhhhhh       hhhhhh hhhhhhhh             


TARGET    49    SQKVNPFREK                                            
3v5wG     56    ase-npfrek -                                          
                                                                      
TARGET                                                                
3v5wG                                                                 



Quality


Template's ligands section
Template without ligands.
No ligands were included in the model.


Quaternary Structure Annotation of the Template
3v5w is annotated as HETERO TRIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3v5w.pdb1.gz

Quaternary Structure Modelling of the Target Protein
3v5w_1


Template Selection
 - Start SMR-Pipeline for:627d0571f5ab0a8e04f41c2751adb8e5 on BC2-cluster at Fri Apr 11 02:56:42
2014 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - No A3m found

 - Run HHSearch to detect more templates...
FATAL - No templates found in HHSEARCH, strange - make sure all DBs are sync'ed correctly
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with R found
 - No template with N found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with Q found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -         ******************************************************************
 - building model based on 3v5wG (7-64) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:627d0571f5ab0a8e04f41c2751adb8e5 on BC2-cluster at Fri Apr 11 02:57:11
2014 



no data available!
Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




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