SWISS-MODEL Repository - Model Details

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1
229

Sequence
UniProt P38483
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
APOBEC_N

Model 3D Structure
Model information:
Modelled residue range: 17 to 158
Based on template: [ 2nyt ]  
Sequence Identity [%]: 27%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    17                 RIEPHEFE VFFDPREL-- -RKETCLLYE IN-WGGRHSI
2nytA     36    sgggmivtge --rlpanffk fqfrnveyss grnktflcyv veaqgkggqv
                                                                      
TARGET                                                 ssss ss        
2nytA                          hhhhhh                ssssss sssss   ss


TARGET    51    WRHTSQNTN- ---KHVEVNF IEKFTTERYF CPNTRCSITW FLSWSPCGEC
2nytA     84    qasrgylede haaahaeeaf fntil--paf dpalrynvtw yvssspcaac
                                                                      
TARGET            sssss                               sssss ss     hhh
2nytA           sssssssss       hhhhh h              ssssss ss     hhh


TARGET    97    SRAITEFLSR YPHVTLFIYI ARLYHHADPR NRQGLRDLIS SGVTIQIMTE
2nytA     132   adriiktlsk tknlrllilv grlfmweepe iqaalkklke agcklrimkp
                                                                      
TARGET          hhhhhhhhhh   ssssssss s       hh hhhhhhhhhh    sssss h
2nytA           hhhhhhhhhh   ssssssss s       hh hhhhhhhhhh    sssss h


TARGET    147   QESGYCWRNF VN ------- ---------- ---------            
2nytA     182   qdfeyvwqnf veqeeafqpw ediqenflyy eekladilk            
                                                                      
TARGET          hhhhhhhhhh                                            
2nytA           hhhhhhhh                hhhhhhhh hhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 656da47e42f2afe4afa0b01b3248cb56 on BC2-cluster at Fri Aug 29 19:35:34 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>656da47e42f2afe4afa0b01b3248cb56
*****************************************************************************
>2nytA Evalue:8.5E-44 SeqID:27.333 Method:HHSEARCH Type:MODEL
-----************************************************------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2nytA          17             158            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 656da47e42f2afe4afa0b01b3248cb56 on gopt-54.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 19:37:24 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.