SWISS-MODEL Repository - Model Details

Model Overview
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1
163

Sequence
UniProt P39442
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Copper-bind

Model 3D Structure
Model information:
Modelled residue range: 72 to 163
Based on template: [ 1pmy ]  
Sequence Identity [%]: 26%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    72         EVVVV TGAGNNGFAF DPAAIRVDVG TTVTWEWTGD GGAHNVVSEP
1pmyA     1     dev--avkml nsgpggmmvf dpalvrlkpg dsikflptdk --ghnvetik
                                                                      
TARGET                ssss sss  sssss s sssss    ssssss          ssss 
1pmyA           sss  sssss sss  sssss s sssss    ssssss          ssss 


TARGET    117   ESDFEFESDR VDEEGFTFEQ TFDDEGVALY VCTPHRAQGM YGAVIVE --
1pmyA     47    gmapdgadyv kttvgqeavv kfdkegvygf kcaphymmgm valvvvgdkr
                                                                      
TARGET                   s ss     sss ss   sssss ss       s sssssss   
1pmyA                    s ss     sss ss   sssss ss       s sssssss   


TARGET          ---------- ---------- -------                         
1pmyA     97    dnleaaksvq hnkltqkrld plfaqiq                         
                                                                      
TARGET                                                                
1pmyA            hhhhhh      hhhhhhhh hhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 11f90f15489540a2d0d14522838bedd0 on BC2-cluster at Sat Aug 30 15:10:18 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>11f90f15489540a2d0d14522838bedd0
**********************************************************************************
>1pmyA Evalue:4.1E-21 SeqID:26.087 Method:HHSEARCH Type:MODEL
-----------------------------------******************-****************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1pmyA          72             163            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 11f90f15489540a2d0d14522838bedd0 on gopt-77.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 15:11:40 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.