SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures

Sequence
UniProt P39956
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P39956: 4932.YER169W

Domain
Link to: [ InterPro ]
zf-C2H2
JmjC
JmjN
zf-C2H2_4

Model 3D Structure
Model information:
Modelled residue range: 6 to 341
Based on template: [ 3opt ]  
Sequence Identity [%]: 88%
Model date: 2013-02-18
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (3opt): MONOMER
Model: MONOMER

Ligand information: [details]
Ligands in the template: AKG: 1, NI: 1.
Ligands in the model: NI: 1
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

TARGET    1       APSEIVGG VPVFKPTYEQ FEDFYAYCKA INKYGMKSGV VKVIPPKEWK
3opt_1#1  6       apseivgg vpvfkptyeq fedfyaycka inkygmksgv vkvippkewk
                                                                      
TARGET                sss  ssss   hhh h   hhhhh    hh       ssss   hhh
3opt_1#1              sss  ssss   hhh h   hhhhh    hh       ssss   hhh


TARGET    49    DKLDLPYSAE TLQKIKIKSP IQQHISGNKG LFMVQNVEKN KTYNIIQWKD
3opt_1#1  54    dkldlpysae tlqkikiksp iqqhisgnkg lfmvqnvekn ktyniiqwkd
                                                                      
TARGET          h       hh hhh   ssss sss  sss s ssss  sss  sss hhhh  
3opt_1#1        h       hh hhh   ssss sss  sss s ssss  sss  sss hhhhhh


TARGET    99    LSKDYVPPED PKARRNSRKG SVSKSTKLKL KNFESSFNID DFEQFRTEYT
3opt_1#1  104   lskdyvpped ---------- ---------- ----ssfnid dfeqfrteyt
                                                                      
TARGET           hh        hhhhhhh     sss                h hhhhh     
3opt_1#1                                                  h hhh       


TARGET    149   IDLSDFQNTE RLKFLEEYYW KTLNFTTPMY GADTPGSIFP EGLNVWNVAK
3opt_1#1  154   idlsdfqnte rlkfleeyyw ktlnfttpmy gadtpgsifp eglnvwnvak
                                                                      
TARGET                 sss hhhhhhhhhh h      sss    sss               
3opt_1#1               hhh hhhhhhhhhh h      sss    sss               


TARGET    199   LPNILDHMET KVPGVNDSYL YAGLWKASFS WHLEDQDLYS INYIHFGAPK
3opt_1#1  204   lp-------- ------dsyl yaglwkasfs whledqdlys inyihfgapk
                                                                      
TARGET            hhhhhhhh h      sss sss   sss          ss ssssssssss
3opt_1#1                          sss sss   sss          ss ssssssssss


TARGET    249   QWYSIPQEDR FKFYKFMQEQ FPEEAKNCPE FLRHKMFLAS PKLLQENGIR
3opt_1#1  254   qwysipqedr fkfykfmqeq fpeeakncpe flrhkmflas pkllqengir
                                                                      
TARGET          sssss    h hhhhhhhh    hhhh       hhh sssss hhhhh     
3opt_1#1        sssss      hhhhh       hhhh       hhh sssss hhhhh     


TARGET    299   CNEIVHHEGE FMITYPYGYH AGFNYGYNLA ESVNFALE             
3opt_1#1  304   cneivhhege fmitypygyh agfnygynla esvnfale-            
                                                                      
TARGET           sssss     ssss    ss sssss ssss sssss                
3opt_1#1         sssss     ssss    ss sssss ssss sssss                



Quality


Template's ligands section
Ligands in the template: AKG: 1, NI: 1.
Ligands in the template that will be assessed: NI2.
Model's ligands section
NI2
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.050
Given the properties calculated previously, the ligand z.NI2 will be included in the final model.
NI2: conservation:True, RMSD:True, included: True

The new model with the included ligands was saved successfully.


Quaternary Structure Annotation of the Template
3opt is annotated as MONOMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3opt.pdb1.gz

Quaternary Structure Modelling of the Target Protein
Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure
Hence, the oligomeric structures of the target and the template can be assumed to be similar (=MONOMER)
The corresponding reliability score is 0.784 (>0.5 indicates similarity)
Model was succesfully built as MONOMER.


Template Selection
 - Start SMR-Pipeline for:ed7fbbdfc9e011dac45245dbbf0bc7db on BC2-cluster at Mon Feb 18 20:08:48
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with C found
 - No template with D found
 - No template with J found
 - No template with I found
 - No template with D found
 - No template with C found
 - No template with C found
 - No template with D found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:5): model based on new templates
 - Send 5 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -  **********************************
 - building model based on 3optA (6-341) was successful 
 -                                                                        *****
 - building model based on 2yt9A (711-757) was successful 
 -  ************************************
 - Oligomeric modeling of 2xmlB was not successful, fall back to monomeric modeling
 - building model based on 2xmlB (14-372) was not successful go to next best template
 -  ************************************
 - Oligomeric modeling of 2xmlA was not successful, fall back to monomeric modeling
 - building model based on 2xmlA (14-372) was not successful go to next best template
 -  ************************************
 - building model based on 2ox0B (14-372) was successful 
 -                                                                           ******
 - building model based on 4gznC (734-788) was successful 
 -                                                                     ******
 - building model based on 4gznC (679-735) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:ed7fbbdfc9e011dac45245dbbf0bc7db on BC2-cluster at Mon Feb 18 20:13:51
2013 




Template Description
Match Chain SeqId

3opw: CRYSTAL STRUCTURE OF THE RPH1 CATALYTIC CORE
Solved by: X-RAY, Resolution: 2.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-341 3opwA 89%
[Model]

3opt: CRYSTAL STRUCTURE OF THE RPH1 CATALYTIC CORE WITH A-KETOGL
Solved by: X-RAY, Resolution: 2.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-341 3optA 89%
[Model]

2emz: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 62660) OF HUMAN ZINC FINGER PROTEIN 95 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-741 2emzA 25%
[Model]
726-765 2emzA 40%
[Model]

2yta: SOLUTION STRUCTURE OF C2H2 TYPE ZINC FINGER DOMAIN 3 IN ZINC FINGER PROTEIN 32
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

702-739 2ytaA 39%
[Model]
731-762 2ytaA 38%
[Model]

2em1: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 63667) OF HUMAN ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

701-741 2em1A 37%
[Model]
731-762 2em1A 38%
[Model]

2ytd: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 42458) OF HUMAN ZINC FINGER PROTEIN 473
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ytdA 28%
[Model]
726-764 2ytdA 36%
[Model]

2eoz: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 80841) OF HUMAN ZINC FINGER PROTEIN 473
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

699-741 2eozA 26%
[Model]
726-768 2eozA 35%
[Model]

2em8: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 42455) OF HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2em8A 28%
[Model]
726-762 2em8A 35%
[Model]

2emx: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 27303) OF HUMAN ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

701-741 2emxA 32%
[Model]
731-762 2emxA 34%
[Model]

2en2: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 59626) OF HUMAN B-CELL LYMPHOMA 6 PROTEIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

699-739 2en2A 34%
[Model]
727-762 2en2A 33%
[Model]

2em2: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 58616) OF HUMAN ZINC FINGER PROTEIN 28 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2em2A 32%
[Model]
726-764 2em2A 33%
[Model]

2eq0: SOLUTION STRUCTURE OF THE 8TH C2H2 TYPE ZINC FINGER DOMAINOF ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2eq0A 34%
[Model]
726-762 2eq0A 32%
[Model]

2eon: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 39429) OF HUMAN ZINC FINGER PROTEIN 95 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2eonA 32%
[Model]
726-763 2eonA 32%
[Model]

2ytg: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 36401) OF HUMAN ZINC FINGER PROTEIN 95 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ytgA 32%
[Model]
726-762 2ytgA 32%
[Model]

2epz: SOLUTION STRUCTURE OF THE 4TH C2H2 TYPE ZINC FINGER DOMAINOF ZINC FINGER PROTEIN 28 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2epzA 28%
[Model]
726-762 2epzA 32%
[Model]

2emk: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 66700) OF HUMAN ZINC FINGER PROTEIN 28 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2emkA 38%
[Model]
726-762 2emkA 32%
[Model]

2epv: SOLUTION STRUCTURE OF THE 20TH C2H2 TYPE ZINC FINGER DOMAIOF ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

699-740 2epvA 26%
[Model]
726-764 2epvA 31%
[Model]

2en1: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 56595) OF HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2en1A 30%
[Model]
726-764 2en1A 31%
[Model]

2m0f: SOLUTION STRUCTURE OF MIZ-1 ZINC FINGER 7
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

707-736 2m0fA 40%
[Model]
737-762 2m0fA 31%
[Model]

2eoi: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 32359) OF HUMAN ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

701-741 2eoiA 32%
[Model]
731-762 2eoiA 31%
[Model]

2ytm: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 69728) OF HUMAN ZINC FINGER PROTEIN 28 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ytmA 26%
[Model]
726-764 2ytmA 31%
[Model]

2eok: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 44469) OF HUMAN ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

701-740 2eokA 28%
[Model]
731-765 2eokA 31%
[Model]

2epw: SOLUTION STRUCTURE OF THE 24TH C2H2 TYPE ZINC FINGER DOMAIOF ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

699-741 2epwA 21%
[Model]
726-762 2epwA 30%
[Model]

2eop: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 71751) OF HUMAN ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2eopA 28%
[Model]
726-762 2eopA 30%
[Model]

2eq4: SOLUTION STRUCTURE OF THE 11TH C2H2 TYPE ZINC FINGER DOMAIOF ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-741 2eq4A 36%
[Model]
726-762 2eq4A 30%
[Model]

2yto: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 65691) OF HUMAN ZINC FINGER PROTEIN 484
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ytoA 23%
[Model]
726-762 2ytoA 30%
[Model]

2emv: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 85889) OF HUMAN ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-740 2emvA 30%
[Model]
726-762 2emvA 30%
[Model]

2em9: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 36399) OF HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2em9A 36%
[Model]
726-762 2em9A 30%
[Model]

2ep3: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 63663) OF HUMAN ZINC FINGER PROTEIN 484
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ep3A 32%
[Model]
726-762 2ep3A 30%
[Model]

2ytj: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 77803) OF HUMAN ZINC FINGER PROTEIN 484
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ytjA 30%
[Model]
726-762 2ytjA 30%
[Model]

2eq3: SOLUTION STRUCTURE OF THE 17TH C2H2 TYPE ZINC FINGER DOMAIOF ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-741 2eq3A 30%
[Model]
726-762 2eq3A 30%
[Model]

2eml: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 75784) OF HUMAN ZINC FINGER PROTEIN 28 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2emlA 30%
[Model]
726-762 2emlA 30%
[Model]

2en6: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 88919) OF HUMAN ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2en6A 32%
[Model]
726-762 2en6A 30%
[Model]

2enc: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 39427) OF HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-741 2encA 27%
[Model]
726-762 2encA 30%
[Model]

2eoe: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 50540) OF HUMAN ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2eoeA 30%
[Model]
726-763 2eoeA 29%
[Model]

2enf: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 34372) OF HUMAN ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2enfA 34%
[Model]
726-763 2enfA 29%
[Model]

2ema: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 31344) OF HUMAN ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-741 2emaA 34%
[Model]
726-763 2emaA 29%
[Model]

2yrh: SOLUTION STRUCTURE OF THE C2H2-TYPE ZINC FINGER DOMAIN (69729) FROM ZINC FINGER PROTEIN 473
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

701-741 2yrhA 34%
[Model]
729-762 2yrhA 29%
[Model]

2yts: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 71747) OF HUMAN ZINC FINGER PROTEIN 484
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ytsA 36%
[Model]
726-763 2ytsA 29%
[Model]

2epc: SOLUTION STRUCTURE OF ZINC FINGER DOMAIN 7 IN ZINC FINGER PROTEIN 32
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

699-738 2epcA 25%
[Model]
727-764 2epcA 29%
[Model]

2yti: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 56596) OF HUMAN ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ytiA 34%
[Model]
726-764 2ytiA 28%
[Model]

2yu8: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 64680) OF HUMAN ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2yu8A 34%
[Model]
726-764 2yu8A 28%
[Model]

2em7: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 33371) OF HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2em7A 32%
[Model]
726-764 2em7A 28%
[Model]

2ysp: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 50539) OF HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-741 2yspA 30%
[Model]
726-764 2yspA 28%
[Model]

2ytb: SOLUTION STRUCTURE OF C2H2 TYPE ZINC FINGER DOMAIN 5 IN ZINC FINGER PROTEIN 32
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

699-739 2ytbA 37%
[Model]
727-762 2ytbA 28%
[Model]

2yrj: SOLUTION STRUCTURE OF THE C2H2-TYPE ZINC FINGER DOMAIN (78813) FROM ZINC FINGER PROTEIN 473
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2yrjA 32%
[Model]
726-764 2yrjA 28%
[Model]

2eq1: SOLUTION STRUCTURE OF THE 9TH C2H2 TYPE ZINC FINGER DOMAINOF ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2eq1A 32%
[Model]
726-762 2eq1A 27%
[Model]

2elz: SOLUTION STRUCTURE OF THE 17TH ZF-C2H2 DOMAIN FROM HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2elzA 26%
[Model]
726-769 2elzA 27%
[Model]

2emy: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 55583) OF HUMAN ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2emyA 30%
[Model]
726-762 2emyA 27%
[Model]

2emg: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 46495) OF HUMAN ZINC FINGER PROTEIN 484
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2emgA 28%
[Model]
726-762 2emgA 27%
[Model]

2emh: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 49523) OF HUMAN ZINC FINGER PROTEIN 484
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2emhA 30%
[Model]
726-762 2emhA 27%
[Model]

2eq2: SOLUTION STRUCTURE OF THE 16TH C2H2 TYPE ZINC FINGER DOMAIOF ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2eq2A 36%
[Model]
726-762 2eq2A 27%
[Model]

2ep2: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 60635) OF HUMAN ZINC FINGER PROTEIN 484
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ep2A 28%
[Model]
726-762 2ep2A 27%
[Model]

2ytr: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 76792) OF HUMAN ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ytrA 34%
[Model]
726-762 2ytrA 27%
[Model]

2eor: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 25287) OF HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2eorA 30%
[Model]
726-762 2eorA 27%
[Model]

2ep1: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 43467) OF HUMAN ZINC FINGER PROTEIN 484
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ep1A 26%
[Model]
726-762 2ep1A 27%
[Model]

2en4: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 28316) OF HUMAN ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

699-741 2en4A 33%
[Model]
727-769 2en4A 26%
[Model]

2ene: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 59624) OF HUMAN ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2eneA 32%
[Model]
726-763 2eneA 26%
[Model]

2ena: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 31343) OF HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

699-741 2enaA 26%
[Model]
726-764 2enaA 26%
[Model]

2em6: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 19231) OF HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-741 2em6A 34%
[Model]
726-765 2em6A 25%
[Model]

2ytf: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 60639) OF HUMAN ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ytfA 30%
[Model]
726-765 2ytfA 25%
[Model]

2em5: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 76800) OF HUMAN ZINC FINGER PROTEIN 95 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-741 2em5A 32%
[Model]
726-769 2em5A 25%
[Model]

2ytn: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 73764) OF HUMAN ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ytnA 34%
[Model]
726-765 2ytnA 25%
[Model]

2emp: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 53568) OF HUMAN ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2empA 34%
[Model]
726-762 2empA 24%
[Model]

2em4: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 72756) OF HUMAN ZINC FINGER PROTEIN 28 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2em4A 28%
[Model]
726-762 2em4A 24%
[Model]

2ep0: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 52560) OF HUMAN ZINC FINGER PROTEIN 28 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ep0A 32%
[Model]
726-763 2ep0A 24%
[Model]

2el6: SOLUTION STRUCTURE OF THE 21TH ZF-C2H2 DOMAIN FROM HUMAN ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

699-741 2el6A 26%
[Model]
726-762 2el6A 24%
[Model]

2emf: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 37411) OF HUMAN ZINC FINGER PROTEIN 484
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-741 2emfA 30%
[Model]
726-762 2emfA 24%
[Model]

2ytp: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 68719) OF HUMAN ZINC FINGER PROTEIN 484
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2ytpA 28%
[Model]
726-763 2ytpA 24%
[Model]

2emc: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 64673) OF HUMAN ZINC FINGER PROTEIN 473
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-741 2emcA 30%
[Model]
726-767 2emcA 24%
[Model]

2el4: SOLUTION STRUCTURE OF THE 15TH ZF-C2H2 DOMAIN FROM HUMAN ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-741 2el4A 27%
[Model]
726-764 2el4A 21%
[Model]

2em0: SOLUTION STRUCTURE OF THE 18TH ZF-C2H2 DOMAIN FROM HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-744 2em0A 32%
[Model]
726-768 2em0A 21%
[Model]

3uk3: CRYSTAL STRUCTURE OF ZNF217 BOUND TO DNA
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

682-733 3uk3D 15%
[Model]
683-732 3uk3C 16%
[Model]
709-761 3uk3D 28%
[Model]
710-761 3uk3C 29%
[Model]
738-788 3uk3D 20%
[Model]
739-789 3uk3C 20%
[Model]

4gzn: MOUSE ZFP57 ZINC FINGERS IN COMPLEX WITH METHYLATED DNA
Solved by: X-RAY, Resolution: 0.99A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

706-761 4gznC 32%
[Model]
679-735 4gznC 18%
[Model]
734-788 4gznC 20%
[Model]

2en9: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 41447) OF HUMAN ZINC FINGER PROTEIN 28 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

698-741 2en9A 30%
[Model]
726-764 2en9A 18%
[Model]

2emj: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 61644) OF HUMAN ZINC FINGER PROTEIN 28 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

675-715 2emjA 15%
[Model]
698-744 2emjA 30%
[Model]
726-762 2emjA 27%
[Model]

2emm: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 54576) OF HUMAN ZINC FINGER PROTEIN 95 HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

675-715 2emmA 15%
[Model]
698-744 2emmA 28%
[Model]
726-762 2emmA 32%
[Model]

2ely: SOLUTION STRUCTURE OF THE THIRD ZF-C2H2 DOMAIN FROM HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

676-715 2elyA 13%
[Model]
698-744 2elyA 32%
[Model]
726-762 2elyA 32%
[Model]

2eoq: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 28315) OF HUMAN ZINC FINGER PROTEIN 224
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

674-715 2eoqA 12%
[Model]
699-744 2eoqA 28%
[Model]
726-762 2eoqA 32%
[Model]

2ytq: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 77807) OF HUMAN ZINC FINGER PROTEIN 268
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

674-715 2ytqA 10%
[Model]
698-744 2ytqA 36%
[Model]
726-762 2ytqA 27%
[Model]

2eow: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 36400) OF HUMAN ZINC FINGER PROTEIN 347
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

675-715 2eowA 10%
[Model]
698-744 2eowA 32%
[Model]
726-762 2eowA 30%
[Model]

2eov: SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 51551) OF HUMAN ZINC FINGER PROTEIN 484
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

674-715 2eovA 10%
[Model]
698-744 2eovA 26%
[Model]
727-762 2eovA 28%
[Model]

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.