SWISS-MODEL Repository

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SWISS-MODEL Repository - Model Details

Model Overview

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474

Sequence

UniProt

P40124

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain

Link to: [ InterPro ]

	CAP_N
	CAP_C

Model 3D Structure

	Model information:
	Modelled residue range:	318 to 474
	Based on template:	[ 1k8f ]
	Sequence Identity [%]:	98%
	Model date:	2013-05-02
	Revision date:	2013-04-01

Quaternary structure information:	[details]
Template (1k8f): DIMER Model: DIMER

Ligand information:	[details]
Ligands in the template: none. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment


TARGET    1     PALLELEGKK WRVENQENVS NLVIDDTELK QVAYIYKCVN TTLQIKGKIN
1k8f_1#3  319   pavlelegkk wrvenqenvs nlviedtelk qvayiykcvn ttlqikgkin
                                                                      
TARGET            sssss ss ssss        sss        ssssss    ssssss    
1k8f_1#3          sssss ss sssss       sss        ssssss    ssssss    


TARGET    51    SITVDNCKKL GLVFDDVVGI VEIINSRDVK VQVMGKVPTI SINKTDGCHA
1k8f_1#3  369   sitvdnckkl glvfddvvgi veiinskdvk vqvmgkvpti sinktdgcha
                                                                      
TARGET          ssssss  ss sssss    s sssss  sss ssss   sss ssss  ssss
1k8f_1#3        ssssss  ss ssss     s sssss  sss ssss   sss ssss  ssss


TARGET    101   YLSKNSLDCE IVSAKSSEMN VLIPTEGGDF NEFPVPEQFK TLWNGQKLVT
1k8f_1#3  419   ylsknsldce ivsakssemn vlipteggdf nefpvpeqfk tlwngqklvt
                                                                      
TARGET          ss       s ssss   sss sssss   ss sssss  sss ssss  ssss
1k8f_1#3        ss       s ssss   sss sssss   ss sssss  sss ssss  ssss


TARGET    151   TVTEIAG PA LLELEGKKWR VENQENVSNL VIDDTELKQV AYIYKCVNTT
1k8f_1#3  469   tvteiag-pa vlelegkkwr venqenvsnl viedtelkqv ayiykcvntt
                                                                      
TARGET          sss        sssss ssss ss       s ss       s sssss   ss
1k8f_1#3        sss        sssss ssss sss      s ss       s sssss   ss


TARGET    200   LQIKGKINSI TVDNCKKLGL VFDDVVGIVE IINSRDVKVQ VMGKVPTISI
1k8f_1#3  361   lqikgkinsi tvdnckklgl vfddvvgive iinskdvkvq vmgkvptisi
                                                                      
TARGET          ssss    ss ssss  ssss ss     sss sss  sssss ss   sssss
1k8f_1#3        ssss    ss ssss  ssss ss     sss sss  sssss ss   sssss


TARGET    250   NKTDGCHAYL SKNSLDCEIV SAKSSEMNVL IPTEGGDFNE FPVPEQFKTL
1k8f_1#3  411   nktdgchayl sknsldceiv sakssemnvl ipteggdfne fpvpeqfktl
                                                                      
TARGET          ss  ssssss        sss ss   sssss sss   ssss sss  sssss
1k8f_1#3        ss  ssssss        sss ss   sssss sss   ssss sss  sssss


TARGET    300   WNGQKLVTTV TEIAG                                      
1k8f_1#3  461   wngqklvttv teiag-                                     
                                                                      
TARGET          ss  ssssss s                                          
1k8f_1#3        ss  ssssss s

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Template without ligands. 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template 
 1k8f is annotated as DIMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 1k8f.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure 
 Hence, the oligomeric structures of the target and the template can be assumed to be similar (=DIMER) 
 The corresponding reliability score is 0.792 (>0.5 indicates similarity) 
 To build the complex the following chains of the complex has been additionally identified: 1k8fB  
 Model was succesfully built as DIMER.

Template Selection

 - Start SMR-Pipeline for:a9550b5b375ca0732e144f22f7f30d75 on BC2-cluster at Thu May  2 19:15:37
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

 - No A3m found

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:2): model based on new templates
 - Send 2 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                       **************************
 - building model based on 1k8fA (318-474) was successful 
 -        *****************************
 - building model based on 1s0pB (43-214) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:a9550b5b375ca0732e144f22f7f30d75 on BC2-cluster at Thu May  2 20:04:44
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

1s0p: STRUCTURE OF THE N-TERMINAL DOMAIN OF THE ADENYLYL CYCLASEASSOCIATED PROTEIN (CAP) FROM DICTYOSTELIUM DISCOIDEUM.
Solved by: X-RAY, Resolution: 1.40A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	42-216	1s0pB	41%	>target YVQAFDSLLANPVAEYLKMSKEIGGDVQKHAEMVHTGLKLERALLATASQCQQPAGNKLSDLLAPISEQIQEVITFREKNRGSKFFNHLSAVSESIQALGWVALAAKPGPFVKEMNDAAMFYTNRVLKEYRDVDKKHVDWVRAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL- >1s0pB SVKEFQNLVDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPSQETLLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFLSWVVVEPTPGPHVAEMRGSAEFYTNRILKEFKGVNQDQVDWVSNYVNFLKDLEKYIKQYHTTGLTWNPKGGDAKSAT [Model]
	42-216	1s0pA	41%	>target YVQAFDSLLANPVAEYLKMSKEIGGDVQKHAEMVHTGLKLERALLATASQCQQPAGNKLSDLLAPISEQIQEVITFREKNRGSKFFNHLSAVSESIQALGWVALAAKPGPFVKEMNDAAMFYTNRVLKEYRDVDKKHVDWVRAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL- >1s0pA SVKEFQNLVDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPSQETLLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFLSWVVVEPTPGPHVAEMRGSAEFYTNRILKEFKGVNQDQVDWVSNYVNFLKDLEKYIKQYHTTGLTWNPKGGDAKSAT [Model]

1tjf: THE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF CAP INDICATES VARIABLE OLIGOMERISATION
Solved by: X-RAY, Resolution: 2.21A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	35-217	1tjfA	39%	>target -PSKGAVPYVQAFDSLLANPVAEYLKMSKEIGGDVQKHAEMVHTGLKLERALLATASQCQQPAGNKLSDLLAPISEQIQEVITFREKNRGSKFFNHLSAVSESIQALGWVALAAKPGPFVKEMNDAAMFYTNRVLKEYRDVDKKHVDWVRAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELS- >1tjfA GAAGPSSASVKEFQNLVDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPSQETLLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFLSWVVVEPTPGPHVAEMRGSAEFYTNRILKEFKGVNQDQVDWVSNYVNFLKDLEKYIKQYHTTGLTWNPKGGDAKSATP [Model]
	35-217	1tjfB	39%	>target --PSKGAVPYVQAFDSLLANPVAEYLKMSKEIGGDVQKHAEMVHTGLKLERALLATASQCQQPAGNKLSDLLAPISEQIQEVITFREKNRGSKFFNHLSAVSESIQALGWVALAAKPGPFVKEMNDAAMFYTNRVLKEYRDVDKKHVDWVRAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELS- >1tjfB SGAAGPSSASVKEFQNLVDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPSQETLLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFLSWVVVEPTPGPHVAEMRGSAEFYTNRILKEFKGVNQDQVDWVSNYVNFLKDLEKYIKQYHTTGLTWNPKGGDAKSATP [Model]

1k4z: C-TERMINAL DOMAIN OF CYCLASE ASSOCIATED PROTEIN
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	317-472	1k4zA	37%	>target EPALLELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPT-EGGDFNEFPVPEQFKTLWNGQKLVTTVTEI >1k4zA MPPRKELVGNKWFIENYENETESLVIDANKDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLSKESLNTEIYTSCSTAINVNLPIGEDDDYVEFPIPEQMKHSFADGKFKSAVFEH [Model]
	317-472	1k4zB	37%	>target EPALLELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPT-EGGDFNEFPVPEQFKTLWNGQKLVTTVTEI >1k4zB MPPRKELVGNKWFIENYENETESLVIDANKDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLSKESLNTEIYTSCSTAINVNLPIGEDDDYVEFPIPEQMKHSFADGKFKSAVFEH [Model]

1kq5: C-TERMINAL DOMAIN OF CYCLASE ASSOCIATED PROTEIN WITH PRO 505 REPLACED BY SER (P505S)
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	317-471	1kq5A	37%	>target EPALLELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPT-EGGDFNEFPVPEQFKTLWNGQKLVTTVTE >1kq5A MPPRKELVGNKWFIENYENETESLVIDANKDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLSKESLNTEIYTSCSTAINVNLPIGEDDDYVEFPISEQMKHSFADGKFKSAVFE [Model]
	317-471	1kq5B	37%	>target EPALLELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPT-EGGDFNEFPVPEQFKTLWNGQKLVTTVTE >1kq5B MPPRKELVGNKWFIENYENETESLVIDANKDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLSKESLNTEIYTSCSTAINVNLPIGEDDDYVEFPISEQMKHSFADGKFKSAVFE [Model]

2b0r: CRYSTAL STRUCTURE OF CYCLASE-ASSOCIATED PROTEIN FROM CRYPTOSPORIDIUM PARVUM
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	312-470	2b0rA	33%	>target -PATKKEPALLELEGKKWRVENQENVSN-LVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPT-EGGDFNEFPVPEQFKTLWNG--QKLVTTVT >2b0rA RQVVTNGSPKVELQKDTYLVENHVNCADPITLSEGSIKNKVSVRCSQNSRIIVEQKVNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTGIVPTISLDKSNKVNIYTSKEGKNVEVYSSKSSEMNLLFPGEEEGDWKELAIPEQFVTKYNESKGKLESMVS [Model]
	312-470	2b0rB	31%	>target -PATKKEPALLELEGKKWRVENQENVSN-LVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNG--QKLVTTVT >2b0rB RQVVTNGSPKVELQKDTYLVENHVNCADPITLSEGSIKNKVSVRCSQNSRIIVEQKVNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTGIVPTISLDKSNKVNIYTSKEGKNVEVYSSKSSEMNLLFP-----WKELAIPEQFVTKYNESKGKLESMVS [Model]

1k8f: CRYSTAL STRUCTURE OF THE HUMAN C-TERMINAL CAP1-ADENYLYL CYCLASE ASSOCIATED PROTEIN
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

318-474	1k8fA	98%	>target PALLELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG >1k8fA PAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG [Model]
318-474	1k8fB	98%	>target PALLELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG >1k8fB PAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG [Model]
387-439	1k8fA	17%	>target -------------------------------IVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVL------------------------------------------------------------------------- >1k8fA PAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG [Model]
387-439	1k8fB	17%	>target -------------------------------IVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVL------------------------------------------------------------------------- >1k8fB PAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG [Model]
318-474	1k8fD	98%	>target PALLELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG >1k8fD PAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG [Model]
318-474	1k8fC	98%	>target PALLELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG >1k8fC PAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG [Model]
387-439	1k8fD	17%	>target -------------------------------IVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVL------------------------------------------------------------------------- >1k8fD PAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG [Model]
387-439	1k8fC	17%	>target -------------------------------IVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVL------------------------------------------------------------------------- >1k8fC PAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG [Model]

3bh6: CRYSTAL STRUCTURE OF THE RP2-ARL3 COMPLEX BOUND TO GPPNHP
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

321-459	3bh6B	15%	>target ------------------LELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLS-------KN-----SL--------DCEIVSAKSSEMNVLIPTEG---GDFNEFPVPEQFKTL-------------------------------------------------------------------------------------------------------------------------------------------- >3bh6B PKDYMFSGLKDETVGRLPGTVAGQQFLIQDCEN-CNIYI--FDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLAC--QQFRVRDCRKLEVFLCCATQPI-IESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI [Model]
326-438	3bh6B	18%	>target -KKWRVENQENVSNLVIDDTEL-KQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >3bh6B PKDYMFSGLKDET-VGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLA--CQQFRVRDCRKLEVFLCCATQP--IIES-SSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI [Model]
352-421	3bh6B	11%	>target -----IYKCVNTTLQ-IKGKIN--SITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >3bh6B PKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI [Model]
370-432	3bh6B	16%	>target ----TVDNCKKLGLVF--DDVVG-IVEIINSRDVKVQVMGKVPTISINKTDGCHAYLS--------KNSLDCEIVSAK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >3bh6B PKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI [Model]

3bh7: CRYSTAL STRUCTURE OF THE RP2-ARL3 COMPLEX BOUND TO GDP-ALF
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

321-459	3bh7B	15%	>target ------------------LELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLS-------KN-----SL--------DCEIVSAKSSEMNVLIPTEG---GDFNEFPVPEQFKTL-------------------------------------------------------------------------------------------------------------------------------------------- >3bh7B PKDYMFSGLKDETVGRLPGTVAGQQFLIQDCEN-CNIYI--FDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLAC--QQFRVRDCRKLEVFLCCATQPI-IESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI [Model]
326-438	3bh7B	18%	>target -KKWRVENQENVSNLVIDDTEL-KQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >3bh7B PKDYMFSGLKDET-VGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLA--CQQFRVRDCRKLEVFLCCATQP--IIES-SSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI [Model]
352-421	3bh7B	11%	>target -----IYKCVNTTLQ-IKGKIN--SITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >3bh7B PKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI [Model]
370-432	3bh7B	16%	>target ----TVDNCKKLGLVF--DDVVG-IVEIINSRDVKVQVMGKVPTISINKTDGCHAYLS--------KNSLDCEIVSAK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >3bh7B PKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI [Model]

2bx6: CRYSTAL STRUCTURE OF THE HUMAN RETINITIS PIGMENTOSA PROTEI2 (RP2)
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

321-418	2bx6A	14%	>target ---------------------LELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ >2bx6A KVDPKDYMFSGLKDETVGRLPGTVAGQQFLIQDCEN-CNIYI--FDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLAC--QQFRVRDCRKLEVFLCCATQP-IIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVLNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQ [Model]
324-438	2bx6A	17%	>target --EGKKWRVENQENVSNLVIDDTE-LKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >2bx6A KVDPKDYMFSGLKDET-VGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLAC--QQFRVRDCRKLEVFLCCATQP--IIE-SSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVLNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQ [Model]
352-421	2bx6A	11%	>target --------IYKCVNTTLQ-IKGKIN--SITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >2bx6A KVDPKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVLNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQ [Model]
388-420	2bx6A	15%	>target ----------------------------VEIINSRDVKVQVMGKVPTISINKTDGCHAYLS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >2bx6A KVDPKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVLNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQ [Model]

2yuh: SOLUTION STRUCTURE OF THE C-TERMINAL REGION IN HUMAN TUBULIN FOLDING COFACTOR C
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

321-418	2yuhA	12%	>target -------------------------LELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAY-------------------------------------------------------------- >2yuhA GSSGSSGSWVCGFSNLESQVLEKRASELHQRDVLLTELSN-CTVRLY--GNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVAC--QQLRIHSTKDTRIFLQVTSRAI-VEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSILPEEERNIQWDSGPSSG [Model]
328-438	2yuhA	18%	>target ----------WRVENQENVSNLVIDDTE-LKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNV--------------------------------------------------------------- >2yuhA GSSGSSGSWVCGFSNLESQ-VLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAV--ACQQLRIHSTKDTRIFLQVTSR--AIVE-DCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSILPEEERNIQWDSGPSSG [Model]
347-441	2yuhA	7%	>target -------KQVAYIYKCVNTTLQI-KGKIN--SITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIP---------------------------------------------------------------------------- >2yuhA GSSGSSGSWVCGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVA--CQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSILPEEERNIQWDSGPSSG [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.