SWISS-MODEL Repository - Model Details

Model Overview
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1
518

Sequence
UniProt P40386
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
HK
TMP-TENI

Model 3D Structure
Model information:
Modelled residue range: 239 to 516
Based on template: [ 1c3q ]  
Sequence Identity [%]: 33%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    239                    LNQI PAALQKLKDF TPLIHHLTNA VAKNFSANVT
1c3qA     65525  mrgshhhhhh gsmd--aqsa akcltavrrh splvhsitnn vvtnftangl
                                                                      
TARGET                             hh hhhhhhhhhh  ssssss      hhhhhhhh
1c3qA                            hhhh hhhhhhhhhh  ssssss      hhhhhhhh


TARGET    273   LAAYGSPTMG ESYDEVADFA KAPGALVLNI GILE--NTKT YIHAAQVNND
1c3qA     37    lalgaspvma yakeevadma kiagalvlni gtlskesvea miiagksane
                                                                      
TARGET          hhh  sss        hhhhh h   sssss          hh hhhhhhhhhh
1c3qA           hhh  sss        hhhhh h   sssss      hhhhhh hhhhhhhhhh


TARGET    321   LARPVILDPV AVGATTARSK VINTLLNYAY YDIIKGNEGE IMNLAG-EQG
1c3qA     87    hgvpvildpv gagatpfrte sardiirevr laairgnaae iahtvgvtdw
                                                                      
TARGET             sssss        hhhhh hhhhhhhh    sssss hhh hhhhh     
1c3qA              sssss        hhhhh hhhhhhhh      sss hhh hhhhh     


TARGET    370   LMRGVDSISQ HTLAARITAV HRLAVERRCV VAMSGAVDVI SDGNSTYVIK
1c3qA     137   likgvdage- -gggdiirla qqaaqklntv iaitgevdvi adtshvytlh
                                                                      
TARGET                         hhhhhh hhhhhhh  s sssss ssss ss  ssssss
1c3qA                          hhhhhh hhhhhhh  s sssss ssss ss  ssssss


TARGET    420   NGNPLLGQIT ASGCSLGSVM GVTASICQND KLLAAITATL LYNIASELAV
1c3qA     185   nghklltkvt gagclltsvv gafcav-een plfaaiaais sygvaaqlaa
                                                                      
TARGET              hh      hhhhhhhhh hhhh       hhhhhhhhhh hhhhhhhhhh
1c3qA               hhh     hhhhhhhhh hhhh       hhhhhhhhhh hhhhhhhhhh


TARGET    470   EAKNSCGDLL VQGPGTFIPI FVDKLHQLIN ETIKGNVDWI ERAKLEK --
1c3qA     234   qqtad----- -kgpgsfqie llnklstvte qdvq------ ewatiervtv
                                                                      
TARGET          hh            hhhhhhh hhhhhh   h hhsss      sssssss   
1c3qA           hh            hhhhhhh hhhhhh   h hhhh       hh sssss  


TARGET          -                                                     
1c3qA     272   s                                                     
                                                                      
TARGET                                                                
1c3qA

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 1dbf5158022feeccc347d263601ee38f on BC2-cluster at Mon Sep  1 01:50:51 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>1dbf5158022feeccc347d263601ee38f
***************************************************************************************
>1c3qA Evalue:0 SeqID:33.808 Method:HHSEARCH Type:MODEL
----------------------------------------***************************************-****-*-
>1g4eA Evalue:4.8E-29 SeqID:29.817 Method:HHSEARCH Type:MODEL
-***********************--*****-*****--------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1c3qA          239            516            HHSEARCH       BUILT          
1g4eA          6              220            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 1dbf5158022feeccc347d263601ee38f on gopt-78.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 01:55:14 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.