SWISS-MODEL Repository - Model Details

Model Overview
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1
917

Sequence
UniProt P43248
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P43248: 7227.FBpp0080203

Domain
Link to: [ InterPro ]
MutS_V
MutS_I
MutS_II
MutS_IV
MutS_III

Model 3D Structure
Model information:
Modelled residue range: 13 to 851
Based on template: [ 2o8b ]  
Sequence Identity [%]: 44%
Model date: 2013-05-07
Revision date: 2013-04-01

Quaternary structure information: [details]
Template (2o8b): HETERO DIMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: ADP: 1, MG: 1.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment

TARGET    1              T LNMDTNARRN FIKFHAKLGE KPATTVRFFD HTDRYTVHGS
2o8bA     1     mavqpke--t lqlesaaevg fvrffqgmpe kptttvrlfd rgdfytahg-
                                                                      
TARGET                         hhhhhh hhhhhh        sssssss s  ssssss 
2o8bA                          hhhhhh hhhhhh        sssssss s  ssssss 


TARGET    42    DDCELVAKIV YKSTAFIGAL LPDDKKETLQ FVSMSKGNFE LAVRELLLVR
2o8bA     48    edallaarev fktqgvikym gpagak-nlq svvlskmnfe sfvkdlllvr
                                                                      
TARGET            hhhhhhhh        sss         ss ssss hhhhh hhhhhhhh  
2o8bA           hhhhhhhhhh        sss ss  ss sss ssss hhhhh hhhhhhhh  


TARGET    92    NYRVEVYVKN ----SSDWEI EYRGSPGNLL QFEDILFSNK EVLVGNSIIS
2o8bA     97    qyrvevyknr agskendwyl aykaspgnls qfedilfgnn igvvg-----
                                                                      
TARGET            ssssssss       ssss ssss                h hhhhhhhhhh
2o8bA             ssssssss       ssss ssss         hhhh      ssss     


TARGET    138   LLVKLDG-GG QRRVGVASVE QNDCKFQLLE FLDDDFFTEL EATVVLLGPK
2o8bA     150   --vkmsavdg qrqvgvgyvd siqrklglce fpdndqfsnl ealliqigpk
                                                                      
TARGET          h  ssss s  ssssssssss s  sssssss s       hh hhhhhhh  s
2o8bA             ssss       ssssssss s  sssssss s       hh hhhhhhh  s


TARGET    187   ECLLPSIE-- GEYSAVKTLL DRNGVMITMP KK--SGDNDL LQDLNRLLRF
2o8bA     198   ecvlpggeta gdmgklrqii qrggiliter kkadfstkdi yqdlnr---g
                                                                      
TARGET          ss             hhhhhh      sss            h hh        
2o8bA           ssss         hhhhhhhh      sssss          h hh        


TARGET    233   AKGQQEDATG LKELQLQLAS NALKTAIKYL DLVNDAGNLG HYEIKQLDLN
2o8bA     248   kkgeqmnsav lpemenqvav sslsavikfl ellsddsnfg qfelttfdfs
                                                                      
TARGET              hh       h   hhhh hhhhhhhhh                       
2o8bA               hh          hhhhh hhhhhhhhh                       


TARGET    283   RFVHLDSAAV AALNIMPKPG THPSMPSYRW QSVLGVLDHC RTPQGHRLMG
2o8bA     298   qymkldiaav ralnlfq--g stgs------ qslaallnkc ktpqgqrlvn
                                                                      
TARGET                hhhh hhh                     hhhhh      hhhhhhhh
2o8bA                 hhhh hhh                     hhhhh      hhhhhhhh


TARGET    333   QWVKQPLRSR NILNDRHNIV QCLLESPDTM ETLSLDYLKR IPDILMLTKK
2o8bA     344   qwikqplmdk nrieerlnlv eafvedaelr qtlqedllrr fpdlnrlakk
                                                                      
TARGET          hhhh     h hhhhhhhhhh hhhhh   hh hhhhhhhhh      hhhhhh
2o8bA           hhhh     h hhhhhhhhhh hhhhh   hh hhhh   hh      hhhhhh


TARGET    383   LMRRKANLQD LFRIYQVILR TPKILKVLHE ---LDNSTIE SVICAPFKSF
2o8bA     394   fqrqaanlqd cyrlyqginq lpnviqalek hegkhqklll avfvtpltdl
                                                                      
TARGET          hhh     hh hhhhhhhh    hhhhhhh                  hhhhhh
2o8bA           hh      hh hhhhhhhh    hhhhhhhh                 hhhhhh


TARGET    430   LKDLTGLKQM VEQVVDFEAI ERGEYLVKAS FDSRLMELQQ MMTELYSKME
2o8bA     444   rsdfskfqem iettldmdqv enheflvkps fdpnlselre imndlekkmq
                                                                      
TARGET          hh   hhhhh hhh   hhhh              hhhhhhhh hhhhhhhhhh
2o8bA           hh   hhhhh hhh   hhhh              hhhhhhhh hhhhhhhhhh


TARGET    480   ELQFKCSQEL NLDGKNQVKL ESVAKLGHHF RITVKDDSVL RKNKNYRIVD
2o8bA     494   stlisaardl gldpgkqikl dssaqfgyyf rvtckeekvl rnnknfstvd
                                                                      
TARGET          hhhhhhhhh          ss sss   ssss ss               ssss
2o8bA           hhhhhhhhh          ss sss   ssss ss               ssss


TARGET    530   VIKGGVRFTS DKLEGYADEF ASCRTRYEEQ QLSIVEEIIH VAVGYAAPLT
2o8bA     544   iqkngvkftn skltslneey tknkteyeea qdaivkeivn issgyvepmq
                                                                      
TARGET          ss  sssss   hhhhhh    hhhhhhhhhh hhhhhhhhhh hhh   hhhh
2o8bA           ss  sssss   hhhhhh    hhhhhhhhhh hhhhhhhhhh hhh      h


TARGET    580   LLNNELAQLD CLVSFAIAAR SAPTPYVRPK MLEEGARELV LEDVRHPCLE
2o8bA     594   tlndvlaqld avvsfahvsn gapvpyvrpa ilekgqgrii lkasrhacve
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh          s ss     sss ss    hhhh
2o8bA           hhhhhhhhhh hhhhhhhhhh          s ss     sss ss    hhhh


TARGET    630   LQEHVNFIAN SVDFKKEECN MFIITGPNMG GKSTYIRSVG TAVLMAHIGA
2o8bA     644   vqdeiafipn dvyfekdkqm fhiitgpnmg gkstyirqtg vivlmaqigc
                                                                      
TARGET          h           sss     s sssss       hhhhhhhhh hhhhhhh   
2o8bA           h           sss     s sssss       hhhhhhhhh hhhhhhh   


TARGET    680   FVPCSLATIS MVDSILGRVG ASDNIIKGLS TFMVEMIETS GIIRTATDKS
2o8bA     694   fvpcesaevs ivdcilarvg ---------s tfmaemleta silrsatkds
                                                                      
TARGET               sssss    sssss               hhhhhhhhh hhh      s
2o8bA                sssss    sssss               hhhhhhhhh hhhh     s


TARGET    730   LVIIDELGRG TSTYEGCGIA WSIAEHLAKE TKCFTLFATH FHEITKLAET
2o8bA     744   liiidelgrg tstydgfgla waiseyiatk igafcmfath fheltalanq
                                                                      
TARGET          ssssss       hhhhhhhh hhhhhhhhh     ssssss      hhhh  
2o8bA           ssssss       hhhhhhhh hhhhhhhhh     ssssss      hhhhhh


TARGET    780   LSTVKNCHMA AVADADDFTL LYQVRSGVME KSFGIQVARL ANFPEHVVQN
2o8bA     794   iptvnnlhvt altteetltm lyqvkkgvcd qsfgihvael anfpkhviec
                                                                      
TARGET              sssss                 sss       hhhhhhh     hhhhhh
2o8bA               sssss                 sss       hhhhhhh     hhhhhh


TARGET    830   AQEVYNEFED                                            
2o8bA     844   akqkalelee f                                          
                                                                      
TARGET          hhhhhh                                                
2o8bA           hhhhhh                                                



Quality


Template's ligands section
Ligands in the template: ADP: 1, MG: 1.
Ligands in the template that will be assessed: ADP201, MG101.
Model's ligands section
ADP201
ADP201 interacts, within a radius of 3 Angstroem, with the following ions: MG101. They will be considered as a single ligand.
One or more ligand's atoms are closer than 1.5 Angstroem to one or more atoms that belong to the model or to other ligands.
Given the properties calculated previously, the ligand ADP201 will not be included in the model.
ADP201: conservation:True, RMSD:False, included: False

No ligands were included in the model.


Quaternary Structure Annotation of the Template
2o8b is annotated as HETERO DIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 2o8b.pdb1.gz

Quaternary Structure Modelling of the Target Protein
2o8b_1


Template Selection
 - Start SMR-Pipeline for:93565a6a1ba6c60148c8375be55bf526 on BC2-cluster at Mon May  6 21:48:46
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - No A3m found

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - Skipping oligomeric state prediction due to too many templates for cluster: 651_787
 - Warning: Oligomer Prediction was not successfull!

 - Warning: clustersMergedFile not found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:2): model based on new templates
 - Send 2 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -  *************************************************************************
 - building model based on 2o8bA (13-851) was successful 
 -   ******************************************************************************
 - building model based on 3thyA (19-914) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:93565a6a1ba6c60148c8375be55bf526 on BC2-cluster at Mon May  6 22:21:17
2013 




Template Description
Match Chain SeqId

1wbb: CRYSTAL STRUCTURE OF E. COLI DNA MISMATCH REPAIR ENZYME MUTS, E38A MUTANT, IN COMPLEX WITH A G.T MISMATCH
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

18-852 1wbbA 22%
[Model]
25-852 1wbbB 23%
[Model]

1ewq: CRYSTAL STRUCTURE TAQ MUTS COMPLEXED WITH A HETERODUPLEX DNA AT 2.2 A RESOLUTION
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

20-851 1ewqA 23%
[Model]
21-849 1ewqB 23%
[Model]

1wbd: CRYSTAL STRUCTURE OF E. COLI DNA MISMATCH REPAIR ENZYME MUTS, E38Q MUTANT, IN COMPLEX WITH A G.T MISMATCH
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

17-852 1wbdA 22%
[Model]
25-852 1wbdB 23%
[Model]

1ng9: E.COLI MUTS R697A: AN ATPASE-ASYMMETRY MUTANT
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

17-852 1ng9A 23%
[Model]
20-852 1ng9B 23%
[Model]

1oh7: THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH G:G MISMATCH
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

17-852 1oh7A 22%
[Model]
25-852 1oh7B 23%
[Model]

1oh5: THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH C:A MISMATCH
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

17-852 1oh5A 22%
[Model]
25-852 1oh5B 23%
[Model]

1nne: CRYSTAL STRUCTURE OF THE MUTS-ADPBEF3-DNA COMPLEX
Solved by: X-RAY, Resolution: 3.11A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

20-851 1nneB 23%
[Model]
20-851 1nneA 23%
[Model]

1oh6: THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN A:A MISMATCH
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

17-852 1oh6A 22%
[Model]
25-852 1oh6B 23%
[Model]

1e3m: THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH G:T MISMATCH
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

17-852 1e3mA 22%
[Model]
25-852 1e3mB 23%
[Model]

1oh8: THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN UNPAIRED THYMIDINE
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

17-852 1oh8A 22%
[Model]
25-852 1oh8B 23%
[Model]

2wtu: CRYSTAL STRUCTURE OF ESCHERICHIA COLI MUTS IN COMPLEX WITHA 16 BASEPAIR OLIGO CONTAINING AN A.A MISMATCH.
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

17-852 2wtuA 23%
[Model]
47-852 2wtuB 23%
[Model]

3k0s: CRYSTAL STRUCTURE OF E.COLI DNA MISMATCH REPAIR PROTEIN MUTS, D693N MUTANT, IN COMPLEX WITH GT MISMATCHED DNA
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

17-852 3k0sA 22%
[Model]
29-852 3k0sB 23%
[Model]

1wb9: CRYSTAL STRUCTURE OF E. COLI DNA MISMATCH REPAIR ENZYME MUTS, E38T MUTANT, IN COMPLEX WITH A G.T MISMATCH
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

19-852 1wb9A 23%
[Model]
25-852 1wb9B 23%
[Model]

1fw6: CRYSTAL STRUCTURE OF A TAQ MUTS-DNA-ADP TERNARY COMPLEX
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

20-851 1fw6A 23%
[Model]
21-849 1fw6B 23%
[Model]

1w7a: ATP BOUND MUTS
Solved by: X-RAY, Resolution: 2.27A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

25-852 1w7aB 23%
[Model]
17-852 1w7aA 23%
[Model]

3thz: HUMAN MUTSBETA COMPLEXED WITH AN IDL OF 6 BASES (LOOP6) AN
Solved by: X-RAY, Resolution: 4.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

16-914 3thzA 40%
[Model]
19-853 3thzB 22%
[Model]

3thx: HUMAN MUTSBETA COMPLEXED WITH AN IDL OF 3 BASES (LOOP3) AN
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

17-914 3thxA 39%
[Model]
19-854 3thxB 22%
[Model]

3thy: HUMAN MUTSBETA COMPLEXED WITH AN IDL OF 2 BASES (LOOP2) AN
Solved by: X-RAY, Resolution: 2.89A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

19-914 3thyA 41%
[Model]
20-853 3thyB 22%
[Model]

3thw: HUMAN MUTSBETA COMPLEXED WITH AN IDL OF 4 BASES (LOOP4) AN
Solved by: X-RAY, Resolution: 3.09A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

16-914 3thwA 41%
[Model]
19-853 3thwB 22%
[Model]

2o8f: HUMAN MUTSALPHA (MSH2/MSH6) BOUND TO DNA WITH A SINGLE BAST INSERT
Solved by: X-RAY, Resolution: 3.25A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

8-852 2o8fA 42%
[Model]
17-854 2o8fB 21%
[Model]

2ghi: CRYSTAL STRUCTURE OF PLASMODIUM YOELII MULTIDRUG RESISTANCPROTEIN 2
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-811 2ghiA 13%
[Model]
648-811 2ghiC 13%
[Model]
651-681 2ghiD 23%
[Model]
648-681 2ghiB 21%
[Model]

2o8e: HUMAN MUTSALPHA (MSH2/MSH6) BOUND TO A G T MISPAIR, WITH ADP BOUND TO MSH2 ONLY
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

9-852 2o8eA 42%
[Model]
17-854 2o8eB 20%
[Model]

2o8d: HUMAN MUTSALPHA (MSH2/MSH6) BOUND TO ADP AND A G DU MISPAI
Solved by: X-RAY, Resolution: 3.37A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

9-852 2o8dA 42%
[Model]
17-854 2o8dB 20%
[Model]

2o8c: HUMAN MUTSALPHA (MSH2/MSH6) BOUND TO ADP AND AN O6-METHYL-GUANINE T MISPAIR
Solved by: X-RAY, Resolution: 3.37A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

9-852 2o8cA 42%
[Model]
17-854 2o8cB 20%
[Model]

2o8b: HUMAN MUTSALPHA (MSH2/MSH6) BOUND TO ADP AND A G T MISPAIR
Solved by: X-RAY, Resolution: 2.75A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

9-852 2o8bA 42%
[Model]
18-854 2o8bB 20%
[Model]

1ewr: CRYSTAL STRUCTURE OF TAQ MUTS
Solved by: X-RAY, Resolution: 3.19A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

124-849 1ewrB 22%
[Model]
144-851 1ewrA 19%
[Model]

3zqj: MYCOBACTERIUM TUBERCULOSIS UVRA
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

628-789 3zqjF 16%
[Model]

1vpl: CRYSTAL STRUCTURE OF ABC TRANSPORTER ATP-BINDING PROTEIN (TM0544) FROM THERMOTOGA MARITIMA AT 2.10 A RESOLUTION
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-787 1vplA 16%
[Model]

1oxt: CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-789 1oxtB 15%
[Model]
649-789 1oxtA 15%
[Model]
649-789 1oxtD 15%
[Model]

1oxx: CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS
Solved by: X-RAY, Resolution: 1.45A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-787 1oxxK 15%
[Model]

1oxs: CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-789 1oxsC 15%
[Model]

2nq2: AN INWARD-FACING CONFORMATION OF A PUTATIVE METAL-CHELATE TYPE ABC TRANSPORTER.
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-787 2nq2C 17%
[Model]
650-787 2nq2D 15%
[Model]

2pjz: THE CRYSTAL STRUCTURE OF PUTATIVE COBALT TRANSPORT ATP- BINDING PROTEIN (CBIO-2), ST1066
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-788 2pjzA 14%
[Model]

1oxu: CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-787 1oxuB 14%
[Model]
649-787 1oxuA 14%
[Model]
649-787 1oxuC 14%
[Model]

1z47: STRUCTURE OF THE ATPASE SUBUNIT CYSA OF THE PUTATIVE SULFATE ATP-BINDING CASSETTE (ABC) TRANSPORTER FROM ALICYCLOBACILLUS ACIDOCALDARIUS
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-787 1z47A 14%
[Model]
647-787 1z47B 14%
[Model]

2onk: ABC TRANSPORTER MODBC IN COMPLEX WITH ITS BINDING PROTEIN MODA
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

652-788 2onkB 14%
[Model]
652-788 2onkA 14%
[Model]
652-788 2onkG 14%
[Model]
652-788 2onkF 14%
[Model]

1oxv: CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-787 1oxvD 14%
[Model]
649-787 1oxvB 14%
[Model]
649-787 1oxvA 14%
[Model]

3fvq: CRYSTAL STRUCTURE OF THE NUCLEOTIDE BINDING DOMAIN FBPC COMPLEXED WITH ATP
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-787 3fvqA 14%
[Model]
649-790 3fvqB 14%
[Model]

1gaj: CRYSTAL STRUCTURE OF A NUCLEOTIDE-FREE ATP-BINDING CASSETTFROM AN ABC TRANSPORTER
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-787 1gajA 14%
[Model]

3gfo: STRUCTURE OF CBIO1 FROM CLOSTRIDIUM PERFRINGENS: PART OF THE ABC TRANSPORTER COMPLEX CBIONQ.
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-788 3gfoA 14%
[Model]

3puy: CRYSTAL STRUCTURE OF AN OUTWARD-FACING MBP-MALTOSE TRANSPOBOUND TO AMP-PNP AFTER CRYSTAL SOAKING OF THE PRETRANSLOC
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-786 3puyA 13%
[Model]
649-786 3puyB 13%
[Model]

2ouk: ABC PROTEIN ARTP IN COMPLEX WITH SULPHATE
Solved by: X-RAY, Resolution: 2.33A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-789 2oukD 13%
[Model]
649-789 2oukB 13%
[Model]
649-788 2oukA 13%
[Model]
649-788 2oukC 13%
[Model]

2olk: ABC PROTEIN ARTP IN COMPLEX WITH ADP-BETA-S
Solved by: X-RAY, Resolution: 2.33A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-788 2olkC 13%
[Model]
649-788 2olkB 13%
[Model]
649-788 2olkA 13%
[Model]
649-788 2olkD 13%
[Model]

3puw: CRYSTAL STRUCTURE OF AN OUTWARD-FACING MBP-MALTOSE TRANSPOBOUND TO ADP-ALF4
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-786 3puwA 13%
[Model]
648-786 3puwB 13%
[Model]

3c4j: ABC PROTEIN ARTP IN COMPLEX WITH ATP-GAMMA-S
Solved by: X-RAY, Resolution: 2.33A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-788 3c4jB 13%
[Model]
649-788 3c4jA 13%
[Model]

3c41: ABC PROTEIN ARTP IN COMPLEX WITH AMP-PNP/MG2+
Solved by: X-RAY, Resolution: 2.33A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-788 3c41J 13%
[Model]
649-788 3c41K 13%
[Model]

1v43: CRYSTAL STRUCTURE OF ATPASE SUBUNIT OF ABC SUGAR TRANSPORT
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-787 1v43A 13%
[Model]

2pcj: CRYSTAL STRUCTURE OF ABC TRANSPORTER (AQ_297) FROM AQUIFEXAEOLICUS VF5
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-790 2pcjB 13%
[Model]
649-790 2pcjA 13%
[Model]

2ihy: STRUCTURE OF THE STAPHYLOCOCCUS AUREUS PUTATIVE ATPASE SUBUNIT OF AN ATP-BINDING CASSETTE (ABC) TRANSPORTER
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-788 2ihyB 16%
[Model]
646-787 2ihyA 13%
[Model]

2q0h: ABC PROTEIN ARTP IN COMPLEX WITH ADP/MG2+, ATP-GAMMA-S HYDROLYZED
Solved by: X-RAY, Resolution: 2.33A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-789 2q0hA 13%
[Model]
649-788 2q0hB 13%
[Model]

3puv: CRYSTAL STRUCTURE OF AN OUTWARD-FACING MBP-MALTOSE TRANSPOBOUND TO ADP-VO4
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-786 3puvA 13%
[Model]
648-786 3puvB 13%
[Model]

3pv0: CRYSTAL STRUCTURE OF A PRE-TRANSLOCATION STATE MBP-MALTOSECOMPLEX WITHOUT NUCLEOTIDE
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-786 3pv0A 13%
[Model]
649-786 3pv0B 13%
[Model]

3fh6: CRYSTAL STRUCTURE OF THE RESTING STATE MALTOSE TRANSPORTERFROM E. COLI
Solved by: X-RAY, Resolution: 4.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-787 3fh6D 13%
[Model]
648-787 3fh6B 13%
[Model]
648-786 3fh6A 13%
[Model]
648-786 3fh6C 13%
[Model]

2awn: CRYSTAL STRUCTURE OF THE ADP-MG-BOUND E. COLI MALK (CRYSTALLIZED WITH ATP-MG)
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-786 2awnC 14%
[Model]
648-787 2awnD 11%
[Model]
649-787 2awnA 13%
[Model]
648-787 2awnB 13%
[Model]

1vci: CRYSTAL STRUCTURE OF THE ATP-BINDING CASSETTE OF MULTISUGATRANSPORTER FROM PYROCOCCUS HORIKOSHII OT3 COMPLEXED WITHATP
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-787 1vciA 13%
[Model]

2d62: CRYSTAL STRUCTURE OF MULTIPLE SUGAR BINDING TRANSPORT ATP-BINDING PROTEIN
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-786 2d62A 13%
[Model]

2pcl: CRYSTAL STRUCTURE OF ABC TRANSPORTER WITH COMPLEX (AQ_297)FROM AQUIFEX AEOLICUS VF5
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-790 2pclA 13%
[Model]

1g9x: CHARACTERIZATION OF THE TWINNING STRUCTURE OF MJ1267, AN ATP-BINDING CASSETTE OF AN ABC TRANSPORTER
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-787 1g9xC 13%
[Model]
648-787 1g9xB 13%
[Model]
648-787 1g9xA 13%
[Model]

1g29: MALK
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-787 1g292 13%
[Model]
648-787 1g291 13%
[Model]

2olj: ABC PROTEIN ARTP IN COMPLEX WITH ADP/MG2+
Solved by: X-RAY, Resolution: 2.33A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-788 2oljA 13%
[Model]
649-788 2oljB 13%
[Model]

2yyz: CRYSTAL STRUCTURE OF SUGAR ABC TRANSPORTER, ATP-BINDING PROTEIN
Solved by: X-RAY, Resolution: 2.11A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-789 2yyzA 13%
[Model]

3puz: CRYSTAL STRUCTURE OF A PRE-TRANSLOCATION STATE MBP-MALTOSECOMPLEX BOUND TO AMP-PNP
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

649-786 3puzB 13%
[Model]
649-786 3puzA 13%
[Model]

3pux: CRYSTAL STRUCTURE OF AN OUTWARD-FACING MBP-MALTOSE TRANSPOBOUND TO ADP-BEF3
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-786 3puxA 13%
[Model]
648-786 3puxB 13%
[Model]

1g6h: CRYSTAL STRUCTURE OF THE ADP CONFORMATION OF MJ1267, AN ATBINDING CASSETTE OF AN ABC TRANSPORTER
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-787 1g6hA 13%
[Model]

3rlf: CRYSTAL STRUCTURE OF THE MALTOSE-BINDING PROTEIN/MALTOSE TCOMPLEX IN AN OUTWARD-FACING CONFORMATION BOUND TO MGAMPP
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-786 3rlfA 13%
[Model]
648-786 3rlfB 13%
[Model]

3d31: MODBC FROM METHANOSARCINA ACETIVORANS
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-835 3d31B 13%
[Model]
648-835 3d31A 13%
[Model]

2r6g: THE CRYSTAL STRUCTURE OF THE E. COLI MALTOSE TRANSPORTER
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-787 2r6gB 12%
[Model]
648-786 2r6gA 12%
[Model]

1q1e: THE ATPASE COMPONENT OF E. COLI MALTOSE TRANSPORTER (MALK)IN THE NUCLEOTIDE-FREE FORM
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-787 1q1eA 12%
[Model]
647-787 1q1eB 12%
[Model]

4hlu: STRUCTURE OF THE ECFA-A' HETERODIMER BOUND TO ADP
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

646-812 4hluD 12%
[Model]
630-812 4hluB 10%
[Model]
630-812 4hluA 10%
[Model]
647-811 4hluC 12%
[Model]

2it1: STRUCTURE OF PH0203 PROTEIN FROM PYROCOCCUS HORIKOSHII
Solved by: X-RAY, Resolution: 1.94A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-787 2it1B 13%
[Model]
649-786 2it1A 12%
[Model]

1q12: CRYSTAL STRUCTURE OF THE ATP-BOUND E. COLI MALK
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-787 1q12C 12%
[Model]
647-787 1q12B 12%
[Model]
647-787 1q12A 12%
[Model]
647-787 1q12D 12%
[Model]

4g1u: X-RAY STRUCTURE OF THE BACTERIAL HEME TRANSPORTER HMUUV FRPESTIS
Solved by: X-RAY, Resolution: 3.01A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

646-787 4g1uC 12%
[Model]
646-787 4g1uD 12%
[Model]

2awo: CRYSTAL STRUCTURE OF THE ADP-MG-BOUND E. COLI MALK (CRYSTALLIZED WITH ADP-MG)
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-787 2awoA 13%
[Model]
648-787 2awoB 13%
[Model]
650-786 2awoC 13%
[Model]
646-789 2awoD 12%
[Model]

2d2e: CRYSTAL STRUCTURE OF ATYPICAL CYTOPLASMIC ABC-ATPASE SUFC FROM THERMUS THERMOPHILUS HB8
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

646-788 2d2eA 12%
[Model]

1q1b: CRYSTAL STRUCTURE OF E. COLI MALK IN THE NUCLEOTIDE-FREE FORM
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-787 1q1bB 12%
[Model]
647-787 1q1bA 12%
[Model]
647-787 1q1bD 12%
[Model]
647-787 1q1bC 12%
[Model]

2d2f: CRYSTAL STRUCTURE OF ATYPICAL CYTOPLASMIC ABC-ATPASE SUFC FROM THERMUS THERMOPHILUS HB8
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-811 2d2fA 11%
[Model]

2qi9: ABC-TRANSPORTER BTUCD IN COMPLEX WITH ITS PERIPLASMIC BINDING PROTEIN BTUF
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

646-787 2qi9D 11%
[Model]
646-787 2qi9C 11%
[Model]

2yz2: CRYSTAL STRUCTURE OF THE ABC TRANSPORTER IN THE COBALT TRANSPORT SYSTEM
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

648-787 2yz2A 11%
[Model]
647-789 2yz2B 11%
[Model]

1l7v: BACTERIAL ABC TRANSPORTER INVOLVED IN B12 UPTAKE
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

646-786 1l7vD 11%
[Model]
646-786 1l7vC 11%
[Model]

1ji0: CRYSTAL STRUCTURE ANALYSIS OF THE ABC TRANSPORTER FROM THERMOTOGA MARITIMA
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

629-811 1ji0A 11%
[Model]

4fi3: STRUCTURE OF VITAMIN B12 TRANSPORTER BTUCD-F IN A NUCLEOTISTATE
Solved by: X-RAY, Resolution: 3.47A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

646-786 4fi3D 10%
[Model]
646-786 4fi3C 10%
[Model]

4dbl: CRYSTAL STRUCTURE OF E159Q MUTANT OF BTUCDF
Solved by: X-RAY, Resolution: 3.49A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-787 4dblD 10%
[Model]
647-787 4dblC 10%
[Model]
647-787 4dblI 10%
[Model]
647-787 4dblH 10%
[Model]

2cbz: STRUCTURE OF THE HUMAN MULTIDRUG RESISTANCE PROTEIN 1 NUCLEOTIDE BINDING DOMAIN 1
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

647-811 2cbzA 9%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.