SWISS-MODEL Repository - Model Details

Model Overview
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1
103

Sequence
UniProt P43491
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
EthD

Model 3D Structure
Model information:
Modelled residue range: 1 to 98
Based on template: [ 2ftr ]  
Sequence Identity [%]: 26%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1          MYRVT IVYNHPADPA AFDEHYSSKH VPLVQQIPSV KRFAAGKCDS
2ftrA     4     enx--xvkli alyeqpedkq afdehyfnth apltrkipgl rdxkvtrivg
                                                                      
TARGET               sssss sssss   hh hhhhhhhhhh hhhhh       sssssss  
2ftrA            ss  sssss sssss   hh hhhhhhhhhh hhhhh       sssssss  


TARGET    46    LDGNPPSAYA LAQLYFESKA EAGQAFASPE GQNAAADVAN FASGGVTMLF
2ftrA     52    spxgeskfyl xcexyyddhe slqqaxrtde gkasgkdaxk fagklltlxi
                                                                      
TARGET                ssss ssssss  hh hhhhhh   h hhhhhhhhhh h   ssssss
2ftrA                 ssss ssssss  hh hhhhh   hh hhhhhhhhhh h   ssssss


TARGET    96    TDE -                                                 
2ftrA     102   geexd                                                 
                                                                      
TARGET          sss                                                   
2ftrA           sssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 9fed3ea51ab3144abfcb41ec978c73c0 on BC2-cluster at Wed Sep  3 15:02:19 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>9fed3ea51ab3144abfcb41ec978c73c0
****************************************************************************************************
***
>2ftrA Evalue:1.2E-25 SeqID:26.531 Method:HHSEARCH Type:MODEL
**************************************************************************************************--
---


TEMPLATE ID    START          STOP           METHOD         STATUS         
2ftrA          1              98             HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 9fed3ea51ab3144abfcb41ec978c73c0 on gopt-54.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 15:03:15 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.