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Model Overview
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1
578

Sequence
UniProt P46150
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
FERM_M
ERM
FERM_N
FERM_C

Model 3D Structure
Model information:
Modelled residue range: 4 to 366
Based on template: [ 2i1j ]  
Sequence Identity [%]: 88%
Model date: 2013-03-01
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (2i1j): MONOMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: GOL: 1, URE: 1.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       KALNVRVT TMDAELEFAI QSTTTGKQLF DQVVKTIGLR EVWFFGLQYT
2i1jA     3       ksmnvrvt tmdaelefai qqtttgkqlf dqvvktiglr evwffglqyt
                                                                      
TARGET              ssssss s  sssssss    ssshhhh hhhhhhh       sssssss
2i1jA               ssssss s  sssssss      hhhhh hhhhhhh       sssssss


TARGET    49    DSKGDSTWIK LYKKVMNQDV KKENPLQFRF RAKFYPEDVA EELIQDITLR
2i1jA     51    dskgdltwik lykkvmqqdv kkenplqfkf rakfypedva deliqeitlk
                                                                      
TARGET          ss  sssss    sss   ss s    sssss sss     hh hh   hhhhh
2i1jA           ss  sssss       hh ss s    sssss sss             hhhhh


TARGET    99    LFYLQVKNAI LTDEIYCPPE TSVLLASYAV QARHGDHNKT THTAGFLAND
2i1jA     101   lfylqvknai lsdeiycppe tsvllasyav qarhgdhnpa vhgpgfland
                                                                      
TARGET          hhhhhhhhhh hh      hh hhhhhhhhhh hhh                  
2i1jA           hhhhhhhhhh hh      hh hhhhhhhhhh hhh              hh  


TARGET    149   RLLPQRVIDQ HKMSKDEWEQ SIMTWWQEHR SMLREDAMME YLKIAQDLEM
2i1jA     151   rllpqrvtdq hkmsreeweq sitnwwqehr gmlredamme ylkiaqdlem
                                                                      
TARGET              hhhhh      hhhhhh hhhhhhhh      hhhhhhh hhhhhh    
2i1jA               hhhhhs ss  hhhhhh hhhhhhhh      hhhhhhh hhhhhh    


TARGET    199   YGVNYFEIRN KKGTDLWLGV DALGLNIYEQ DDRLTPKIGF PWSEIRNISF
2i1jA     201   ygvnyfeirn kkntelwlgv dalglniyek ddkltpkigf pwseirnisf
                                                                      
TARGET             sssss        sssss s  sssss          sss    sssssss
2i1jA              sssss        sssss s  sssss          sss    sssssss


TARGET    249   SEKKFIIKPI DKKAPDFMFF APRVRINKRI LALCMGNHEL YMRRRKPDTI
2i1jA     251   ndrkfiikpi dkkapdfvff aprvrvnkri lalcmgnhel ymrrrkpdti
                                                                      
TARGET          s ssssssss       ssss s   hhhhhh hhhhhhhhhh hhhh     h
2i1jA           ssssssssss       ssss s  hhhhhhh hhhhhhhhhh hhhh     h


TARGET    299   DVQQMKAQAR EEKNAKQQER EKLQLALAAR ERAEKKQQEY EDRLKQMQED
2i1jA     301   dvqqmkaqar eeklakqaqr eklqleiaar eraekkqqey qdrlrqmqee
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh h       hh hhhhhhhhhh hhhhhhhhhh
2i1jA           hhhhhhhhhh hhhhhhhhhh h       hh hhhhhhhhhh hhhhhhhhhh


TARGET    349   MERSQRDLLE AQDMI ---- ---------- ---------- ----------
2i1jA     351   mersqanlle aqdmvedarr kqdeaaaall aattpqhhhv aeresgggdl
                                                                      
TARGET          hhhhhhhhhh hh                                         
2i1jA           hhhhhhhhhh hh   hhhhh hhhhhhhhhh h             sssssss


TARGET          ---------- ---------- ---------- ---------- ----------
2i1jA     493   argpddlvdp vadrrtlaer nerlhnqlka lkqdlarscd etketamdki
                                                                      
TARGET                                                                
2i1jA                      hhh   hhh    hhhhhhhh hhhhhh sss      hhhhh


TARGET          ---------- ---------- ---------- ---                  
2i1jA     543   hrenvrqgrd kyktlreirk gntkrrvdqf enm                  
                                                                      
TARGET                                                                
2i1jA           hhhhhhh    hhhhhhhh      hhhhhhh hh

Quality 


Template's ligands section 
Ligands in the template: GOL: 1, URE: 1. 
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 2i1j is annotated as MONOMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 2i1j.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 Analysis of evolutionary and family specific aspects revealed non-conservation of the oligomeric structure 
 Hence, the oligomeric structures of the target and the template cannot be assumed to be similar (=MONOMER) 
 The target structure was calculated as SINGLE CHAIN 
 The corresponding reliability score is 0.356 (>0.5 indicates similarity)

Template Selection 
 - Start SMR-Pipeline for:4fcd824dc6f0f440606c356a8c45bf67 on BC2-cluster at Fri Mar  1 17:44:04
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  2 go for
modeling ...

FATAL - No A3m found

 - No template with B found
 - No template with B found
 - No template with F found
 - No template with D found
 - No template with C found
 - No template with C found
 - No template with D found
 - No template with B found
 - No template with G found
 - No template with F found
 - No template with H found
 - No template with E found
 - No template with F found
 - No template with E found
 - No template with H found
 - No template with G found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:2): model based on new templates
 - Send 2 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -  **************************************************
 - building model based on 2i1jA (4-366) was successful 
 -  ********************************************************************************
 - building model based on 2i1kA (4-578) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:4fcd824dc6f0f440606c356a8c45bf67 on BC2-cluster at Fri Mar  1 17:47:42
2013


Template Description
Match Chain SeqId

2i1j: MOESIN FROM SPODOPTERA FRUGIPERDA AT 2.1 ANGSTROMS RESOLUTION
Solved by: X-RAY, Resolution: 2.10A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-366 2i1jA 89%
[Model]

2yvc: CRYSTAL STRUCTURE OF THE RADIXIN FERM DOMAIN COMPLEXED WITTHE NEP CYTOPLASMIC TAIL
Solved by: X-RAY, Resolution: 3.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-298 2yvcA 82%
[Model]
3-297 2yvcB 82%
[Model]
6-297 2yvcC 83%
[Model]

2emt: CRYSTAL STRUCTURE ANALYSIS OF THE RADIXIN FERM DOMAIN COMPLEXED WITH ADHESION MOLECULE PSGL-1
Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-311 2emtA 83%
[Model]
3-311 2emtB 83%
[Model]

1j19: CRYSTAL STRUCTURE OF THE RADXIN FERM DOMAIN COMPLEXED WITHTHE ICAM-2 CYTOPLASMIC PEPTIDE
Solved by: X-RAY, Resolution: 2.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-311 1j19A 83%
[Model]

1gc7: CRYSTAL STRUCTURE OF THE RADIXIN FERM DOMAIN
Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-298 1gc7A 82%
[Model]

2zpy: CRYSTAL STRUCTURE OF THE MOUSE RADXIN FERM DOMAIN COMPLEXEWITH THE MOUSE CD44 CYTOPLASMIC PEPTIDE
Solved by: X-RAY, Resolution: 2.10A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-298 2zpyA 82%
[Model]

2d10: CRYSTAL STRUCTURE OF THE RADIXIN FERM DOMAIN COMPLEXED WITTHE NHERF-1 C-TERMINAL TAIL PEPTIDE
Solved by: X-RAY, Resolution: 2.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-298 2d10A 82%
[Model]
4-300 2d10B 82%
[Model]
4-300 2d10C 82%
[Model]
4-300 2d10D 82%
[Model]

2d2q: CRYSTAL STRUCTURE OF THE DIMERIZED RADIXIN FERM DOMAIN
Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-300 2d2qA 82%
[Model]
4-305 2d2qB 82%
[Model]

2d11: CRYSTAL STRUCTURE OF THE RADIXIN FERM DOMAIN COMPLEXED WITTHE NHERF-2 C-TERMINAL TAIL PEPTIDE
Solved by: X-RAY, Resolution: 2.81A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-297 2d11A 82%
[Model]
4-297 2d11B 82%
[Model]
4-297 2d11C 82%
[Model]
4-297 2d11D 82%
[Model]

1gc6: CRYSTAL STRUCTURE OF THE RADIXIN FERM DOMAIN COMPLEXED WITINOSITOL-(1,4,5)-TRIPHOSPHATE
Solved by: X-RAY, Resolution: 2.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-298 1gc6A 82%
[Model]

2i1k: MOESIN FROM SPODOPTERA FRUGIPERDA REVEALS THE COILED-COIL DOMAIN AT 3.0 ANGSTROM RESOLUTION
Solved by: X-RAY, Resolution: 3.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-578 2i1kA 81%
[Model]

2ems: CRYSTAL STRUCTURE ANALYSIS OF THE RADIXIN FERM DOMAIN COMPLEXED WITH ADHESION MOLECULE CD43
Solved by: X-RAY, Resolution: 2.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-317 2emsA 81%
[Model]

1ef1: CRYSTAL STRUCTURE OF THE MOESIN FERM DOMAIN/TAIL DOMAIN COMPLEX
Solved by: X-RAY, Resolution: 1.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-298 1ef1B 80%
[Model]
6-298 1ef1A 80%
[Model]

1sgh: MOESIN FERM DOMAIN BOUND TO EBP50 C-TERMINAL PEPTIDE
Solved by: X-RAY, Resolution: 3.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-298 1sghA 80%
[Model]

1e5w: STRUCTURE OF ISOLATED FERM DOMAIN AND FIRST LONG HELIX OF MOESIN
Solved by: X-RAY, Resolution: 2.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-325 1e5wA 79%
[Model]

1ni2: STRUCTURE OF THE ACTIVE FERM DOMAIN OF EZRIN
Solved by: X-RAY, Resolution: 2.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-298 1ni2A 78%
[Model]
3-298 1ni2B 78%
[Model]

1isn: CRYSTAL STRUCTURE OF MERLIN FERM DOMAIN
Solved by: X-RAY, Resolution: 2.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-324 1isnA 61%
[Model]

1h4r: CRYSTAL STRUCTURE OF THE FERM DOMAIN OF MERLIN, THE NEUROFIBROMATOSIS 2 TUMOR SUPPRESSOR PROTEIN.
Solved by: X-RAY, Resolution: 1.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-297 1h4rA 61%
[Model]
4-297 1h4rB 61%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.