SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
165

Sequence
UniProt P46783
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P46783: 9606.ENSP0000034

Domain
Link to: [ InterPro ]
S10_plectin

Model 3D Structure
Model information:
Modelled residue range: 1 to 101
Based on template: [ 3u5g ]  
Sequence Identity [%]: 53%
Model date: 2013-04-22
Revision date: 2013-04-01

Quaternary structure information: [details]
Template (3u5g): HETERO 34-mer
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment 

TARGET    1       MLMPKKNR IAIYELLFKE GVMVAKKDVH MPKHPELADK NVPNLHVMKA
3u5gK     1       mlmpkedr nkihqylfqe gvvvakkdfn qakheeidtk n---lyvika
                                                                      
TARGET                 hhh hhhhhhhhh                            hhhhhh
3u5gK                  hhh hhhhhhhhh                        h   hhhhhh


TARGET    49    MQSLKSRGYV KEQFAWRHFY WYLTNEGIQY LRDYLHLPPE IVPATLRRSR
3u5gK     46    lqsltskgyv ktqfswqyyy ytlteegvey lreylnlpe- -vpgtyiqer
                                                                      
TARGET          hhhhh   ss sssss  sss sssshhhhhh hhhh                 
3u5gK           hhhhh   ss sssss  sss sssshhhhhh hh                   


TARGET    99    PET                                                   
3u5gK     96    npt-                                                  
                                                                      
TARGET                                                                
3u5gK

Quality 


Template's ligands section 
Template without ligands. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 3u5g is annotated as HETERO 34-mer 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 3u5g.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 3u5g_1

Template Selection 
 - Start SMR-Pipeline for:97d9efda9e82f135524fb3741cc9dfa8 on BC2-cluster at Mon Apr 22 20:19:51
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with E found
 - No template with F found
 - No template with G found
 - No template with H found
 - No template with I found
 - No template with J found
 - No template with L found
 - No template with M found
 - No template with N found
 - No template with O found
 - No template with P found
 - No template with Q found
 - No template with R found
 - No template with S found
 - No template with T found
 - No template with U found
 - No template with V found
 - No template with W found
 - No template with X found
 - No template with Y found
 - No template with Z found
 - No template with a found
 - No template with b found
 - No template with c found
 - No template with d found
 - No template with e found
 - No template with f found
 - No template with g found
 - No template with h found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 - ************************************************
 - building model based on 3u5cK (1-98) was not successful go to next best template
 - *************************************************
 - building model based on 3u5gK (1-101) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:97d9efda9e82f135524fb3741cc9dfa8 on BC2-cluster at Mon Apr 22 20:21:25
2013


Template Description
Match Chain SeqId

3zey: HIGH-RESOLUTION CRYO-ELECTRON MICROSCOPY STRUCTURE OF THE BRUCEI RIBOSOME
Solved by: X-RAY, Resolution: 5.57A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-99 3zeyD 47%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.