SWISS-MODEL Repository - Model Details

Model Overview
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1
378

Sequence
UniProt P47774 C-C chemokine receptor type 7 (Epstein-Barr virus-induced G-protein coupled receptor 1)
Mus musculus (Mouse).
Database: Swiss-Prot (Reviewed) manually annotated and reviewed

Domain
Link to: [ InterPro ]
7tm_1

Model 3D Structure
Model information:
Modelled residue range: 54 to 250
Based on template: [ 3oe9 ]  
Sequence Identity [%]: 40%
Model date: 2013-11-22
Revision date: 2013-11-19

Quaternary structure information: [details]
Template (3oe9): DIMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: ITD: 1.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-11-19. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

TARGET    1         RNFKAW FLPLMYSVIC FVGLLGNGLV ILTYIYFKRL KTMTDTYLLN
3oe9A     28    cf--rnfnki flptiysiif ltgivgnglv ilvmgyqkkl rsmtdkyrlh
                                                                      
TARGET                        hhhhhhh hhhhhhhhhh hhhh          hhhhhhh
3oe9A                       hhhhhhhhh hhhhhhhhhh hhhhh         hhhhhhh


TARGET    47    LAVADILFLL ILPFWAYSEA KSWIFGVYLC KGIFGIYKLS FFSGMLLLLC
3oe9A     80    lsvadllfvi tlpfwavdav anwyfgnflc kavhviytvn lyssvwilaf
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh       hhhh hhhhhhhhhh hhhhhhhhhh
3oe9A           hhhhhhhhhh hhhhhhhhhh       hhhh hhhhhhhhhh hhhhhhhhhh


TARGET    97    ISIDRYVAIV QAVSAHRHRA RVLLISKLSC VGIWMLALFL SIPELLYSGL
3oe9A     130   isldrylaiv hatnsqrprk --llaekvvy vgvwipalll tipdfifanv
                                                                      
TARGET          hhhhhhhhhh                    h    hhhhhhhh hhhh  ssss
3oe9A           hhhhhhhhh          hh   hhh   h    hhhhhh    hhh  ssss


TARGET    147   QKNSGEDTLR CSLVSAQVEA LITIQVAQMV FGFLVPMLAM SFCYLIIIRT
3oe9A     178   se--addryi cdrfypndlw vvvfqfqhim vglilpgivi lscyciiisk
                                                                      
TARGET          s        s ssss    hh hhh   hhhh h   hhhhhh hhhhhhhhhh
3oe9A           s        s ssss    hh hhh   hhhh h   hhhhhh hhhhhhhhhh


TARGET    197   L -------- ---------- ---------- ---------- ----------
3oe9A     226   lshnifemlr ideglrlkiy kgyytigigh lltkspslna akseldkaig
                                                                      
TARGET                                                                
3oe9A              hhhhhhh hhh   sss     sss   s ss     hhh hhhhhh    


TARGET          ---------- ---------- ---------- ---------- ----------
3oe9A     1052  rntngvitkd eaeklfnqdv daavrgilrn aklkpvydsl davrraalin
                                                                      
TARGET                                                                
3oe9A               sss hh hhhhhhhhhh hhhhhh   h hhhhhhhh    hhhhhhhhh


TARGET          ---------- ---------- ---------- ---------- ----------
3oe9A     1102  mvfqmgetgv agftnslrml qqkrwdeaav nlaksrwynq tpnrakrvit
                                                                      
TARGET                                                                
3oe9A           hhh   hhhh h   hhhhhh    hhhhhhh hh    h    hhhhhhhhhh


TARGET          ---------- ---------- ---------- ---------- ----------
3oe9A     1152  tfrtgtwday kalkptvili laffacwlpy yigisidsfi lleiikcefe
                                                                      
TARGET                                                                
3oe9A           hhhh          hhhhhhh hhhhhhhhhh hhhhhhhhhh h      hhh


TARGET          ---------- ---------- ------                          
3oe9A     278   ntvhkwisit ealaffhccl npilya                          
                                                                      
TARGET                                                                
3oe9A           hhhhhhhhhh hhhhhhh    hhh                             



Quality


Template's ligands section
Ligands in the template: ITD: 1.
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page.
No ligands were included in the model.


Quaternary Structure Annotation of the Template
3oe9 is annotated as DIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3oe9.pdb1.gz

Quaternary Structure Modelling of the Target Protein
Analysis of evolutionary and family specific aspects revealed non-conservation of the oligomeric structure
Hence, the oligomeric structures of the target and the template cannot be assumed to be similar (=DIMER)
The target structure was calculated as SINGLE CHAIN
The corresponding reliability score is 0.006 (>0.5 indicates similarity)
To build the complex the following chains of the complex has been additionally identified: 3oe9B


Template Selection
 - Start SMR-Pipeline for:c45dd7e71693b788cb938da5aabe8195 on BC2-cluster at Fri Nov 22 02:17:28
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - No A3m found

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with C found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with G found
 - No template with N found
 - No template with A found
 - No template with B found
 - No template with G found
 - No template with N found
 - No template with L found
 - No template with H found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with L found
 - No template with H found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with L found
 - No template with H found
 - No template with B found
 - No template with B found
 - No template with I found
 - No template with I found
 - No template with I found
 - No template with I found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:3): model based on new templates
 - Send 3 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -            ******************************************
 - building model based on 3oe9A (54-250) was successful 
 -            *************************************************************
 - building model based on 2lnlA (52-341) was successful 
 -        ******************************************************************
 - building model based on 3v2wA (31-340) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:c45dd7e71693b788cb938da5aabe8195 on BC2-cluster at Fri Nov 22 02:28:47
2013 




Template Description
Match Chain SeqId

2lnl: STRUCTURE OF HUMAN CXCR1 IN PHOSPHOLIPID BILAYERS
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

54-345 2lnlA 37%
[Model]

1hof: NMR STRUCTURE OF T3-I2, A 32 RESIDUE PEPTIDE FROM THE ALPH2A ADRENERGIC RECEPTOR
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

141-171 1hofA 35%
[Model]

1hll: NMR STRUCTURE OF T3-I2, A 32 RESIDUE PEPTIDE FROM THE ALPH2A ADRENERGIC RECEPTOR
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

141-171 1hllA 35%
[Model]

1ho9: BEST 20 NMR CONFORMERS OF D130I MUTANT T3-I2, A 32 RESIDUEPEPTIDE FROM THE ALPHA 2A ADRENERGIC RECEPTOR
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

141-171 1ho9A 32%
[Model]

1hod: NMR STRUCTURE OF D130I MUTANT T3-I2, A 32 RESIDUE PEPTIDE FROM THE ALPHA 2A ADRENERGIC RECEPTOR
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

141-171 1hodA 32%
[Model]

4mbs: CRYSTAL STRUCTURE OF THE CCR5 CHEMOKINE RECEPTOR
Solved by: X-RAY, Resolution: 2.71A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

47-342 4mbsB 31%
[Model]
47-342 4mbsA 31%
[Model]

4ea3: STRUCTURE OF THE N/OFQ OPIOID RECEPTOR IN COMPLEX WITH A PMIMETIC
Solved by: X-RAY, Resolution: 3.01A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-340 4ea3B 28%
[Model]
58-338 4ea3A 28%
[Model]

2low: SOLUTION STRUCTURE OF AR55 IN 50% HFIP
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

48-91 2lowA 27%
[Model]

1fdf: HELIX 7 BOVINE RHODOPSIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

314-335 1fdfA 27%
[Model]

2lou: AR55 SOLUBILISED IN DPC MICELLES
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

48-91 2louA 27%
[Model]

2lot: AR55 SOLUBILISED IN SDS MICELLES
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

48-91 2lotA 27%
[Model]

2lov: AR55 SOLUBILISED IN LPPG MICELLES
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

48-91 2lovA 27%
[Model]

3oe6: CRYSTAL STRUCTURE OF THE CXCR4 CHEMOKINE RECEPTOR IN COMPLSMALL MOLECULE ANTAGONIST IT1T IN I222 SPACEGROUP
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-336 3oe6A 24%
[Model]

2koe: HUMAN CANNABINOID RECEPTOR 1 - HELIX 7/8 PEPTIDE
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

311-343 2koeA 24%
[Model]

3odu: THE 2.5 A STRUCTURE OF THE CXCR4 CHEMOKINE RECEPTOR IN COMSMALL MOLECULE ANTAGONIST IT1T
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

48-344 3oduA 22%
[Model]
55-341 3oduB 22%
[Model]

3oe9: CRYSTAL STRUCTURE OF THE CHEMOKINE CXCR4 RECEPTOR IN COMPLSMALL MOLECULE ANTAGONIST IT1T IN P1 SPACEGROUP
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-327 3oe9B 22%
[Model]
55-327 3oe9A 22%
[Model]

3aym: CRYSTAL STRUCTURE OF THE BATHO INTERMEDIATE OF SQUID RHODO
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

51-352 3aymA 20%
[Model]
52-351 3aymB 21%
[Model]

3oe0: CRYSTAL STRUCTURE OF THE CXCR4 CHEMOKINE RECEPTOR IN COMPLCYCLIC PEPTIDE ANTAGONIST CVX15
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

45-327 3oe0A 21%
[Model]

2vt4: TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONAND BOUND CYANOPINDOLOL
Solved by: X-RAY, Resolution: 2.7A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

60-341 2vt4A 21%
[Model]
60-342 2vt4B 21%
[Model]
60-328 2vt4C 21%
[Model]
60-341 2vt4D 21%
[Model]

3oe8: CRYSTAL STRUCTURE OF THE CXCR4 CHEMOKINE RECEPTOR IN COMPLSMALL MOLECULE ANTAGONIST IT1T IN P1 SPACEGROUP
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-329 3oe8C 21%
[Model]
56-329 3oe8A 22%
[Model]
57-328 3oe8B 21%
[Model]

2z73: CRYSTAL STRUCTURE OF SQUID RHODOPSIN
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

51-352 2z73A 20%
[Model]
52-351 2z73B 21%
[Model]

3zpr: THERMOSTABILISED TURKEY BETA1 ADRENERGIC RECEPTOR WITH 4- METHYL-2-(PIPERAZIN-1-YL) QUINOLINE BOUND
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

58-341 3zprA 21%
[Model]
58-341 3zprB 20%
[Model]

3ayn: CRYSTAL STRUCTURE OF SQUID ISORHODOPSIN
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

51-352 3aynA 20%
[Model]
52-351 3aynB 21%
[Model]

4lde: STRUCTURE OF BETA2 ADRENOCEPTOR BOUND TO BI167107 AND AN ENANOBODY
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

59-341 4ldeA 20%
[Model]

2ycw: TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONAND BOUND ANTAGONIST CARAZOLOL
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-342 2ycwA 20%
[Model]
57-342 2ycwB 20%
[Model]

3uza: THERMOSTABILISED ADENOSINE A2A RECEPTOR IN COMPLEX WITH 6-DIMETHYLPYRIDIN-4-YL)-5-PHENYL-1,2,4-TRIAZIN-3-AMINE
Solved by: X-RAY, Resolution: 3.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

62-342 3uzaA 20%
[Model]

2y03: TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONAND BOUND AGONIST ISOPRENALINE
Solved by: X-RAY, Resolution: 3.05A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-341 2y03A 20%
[Model]
58-341 2y03B 20%
[Model]

2ksa: SUBSTANCE P IN DMPC/CHAPS ISOTROPIC Q=0.25 BICELLES AS A LNK1R
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

54-349 2ksaA 20%
[Model]

4amj: TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONAND BOUND BIASED AGONIST CARVEDILOL
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-341 4amjB 19%
[Model]
55-341 4amjA 20%
[Model]

4ldo: STRUCTURE OF BETA2 ADRENOCEPTOR BOUND TO ADRENALINE AND ANNANOBODY
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

59-341 4ldoA 20%
[Model]

2ksb: SUBSTANCE P IN ISOTROPIC Q=0.25 DMPC/CHAPS/GM1 BICELLES ASFOR NK1R
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

54-349 2ksbA 20%
[Model]

3zpq: THERMOSTABILISED TURKEY BETA1 ADRENERGIC RECEPTOR WITH 4-(PIPERAZIN-1-YL)-1H-INDOLE BOUND (COMPOUND 19)
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

55-341 3zpqA 20%
[Model]
56-341 3zpqB 19%
[Model]

3rey: THERMOSTABILISED ADENOSINE A2A RECEPTOR IN COMPLEX WITH XA
Solved by: X-RAY, Resolution: 3.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

62-342 3reyA 20%
[Model]

2ydv: THERMOSTABILISED HUMAN A2A RECEPTOR WITH NECA BOUND
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-356 2ydvA 20%
[Model]

2ycy: TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONAND BOUND ANTAGONIST CYANOPINDOLOL
Solved by: X-RAY, Resolution: 3.15A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

59-342 2ycyA 20%
[Model]
59-342 2ycyB 20%
[Model]

3sn6: CRYSTAL STRUCTURE OF THE BETA2 ADRENERGIC RECEPTOR-GS PROT
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

59-341 3sn6R 20%
[Model]

4ldl: STRUCTURE OF BETA2 ADRENOCEPTOR BOUND TO HYDROXYBENZYLISOPAND AN ENGINEERED NANOBODY
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

59-341 4ldlA 20%
[Model]

3uzc: THERMOSTABILISED ADENOSINE A2A RECEPTOR IN COMPLEX WITH 4-PHENYL-1,2,4-TRIAZIN-6-YL)-2-CHLOROPHENOL
Solved by: X-RAY, Resolution: 3.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

62-342 3uzcA 20%
[Model]

2ycz: TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONBOUND ANTAGONIST IODOCYANOPINDOLOL
Solved by: X-RAY, Resolution: 3.65A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

59-342 2yczA 20%
[Model]
59-342 2yczB 20%
[Model]

2ycx: TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONAND BOUND ANTAGONIST CYANOPINDOLOL
Solved by: X-RAY, Resolution: 3.25A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

59-338 2ycxA 20%
[Model]
59-341 2ycxB 20%
[Model]

4gpo: OLIGOMEIC TURKEY BETA1-ADRENERGIC G PROTEIN-COUPLED RECEPT
Solved by: X-RAY, Resolution: 3.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

58-340 4gpoA 21%
[Model]
58-340 4gpoB 20%
[Model]

3rfm: THERMOSTABILISED ADENOSINE A2A RECEPTOR IN COMPLEX WITH CA
Solved by: X-RAY, Resolution: 3.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

62-342 3rfmA 20%
[Model]

3pwh: THERMOSTABILISED ADENOSINE A2A RECEPTOR
Solved by: X-RAY, Resolution: 3.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

62-342 3pwhA 20%
[Model]

2y02: TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONAND BOUND AGONIST CARMOTEROL
Solved by: X-RAY, Resolution: 3.05A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-341 2y02A 20%
[Model]
58-341 2y02B 20%
[Model]

2y04: TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONAND BOUND PARTIAL AGONIST SALBUTAMOL
Solved by: X-RAY, Resolution: 3.05A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-341 2y04A 20%
[Model]
58-341 2y04B 20%
[Model]

2ziy: CRYSTAL STRUCTURE OF SQUID RHODOPSIN
Solved by: X-RAY, Resolution: 3.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

54-357 2ziyA 20%
[Model]

4ami: TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONAND BOUND BIASED AGONIST BUCINDOLOL
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-341 4amiA 20%
[Model]
57-341 4amiB 20%
[Model]

2y00: TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONAND BOUND PARTIAL AGONIST DOBUTAMINE (CRYSTAL DOB92)
Solved by: X-RAY, Resolution: 3.05A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-341 2y00A 20%
[Model]
58-341 2y00B 20%
[Model]

2y01: TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONAND BOUND PARTIAL AGONIST DOBUTAMINE (CRYSTAL DOB102)
Solved by: X-RAY, Resolution: 3.05A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-341 2y01A 20%
[Model]
58-341 2y01B 20%
[Model]

2ks9: SOLUTION CONFORMATION OF SUBSTANCE P IN WATER COMPLEXED WI
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

54-349 2ks9A 20%
[Model]

2ydo: THERMOSTABILISED HUMAN A2A RECEPTOR WITH ADENOSINE BOUND
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

61-355 2ydoA 20%
[Model]

1jfp: STRUCTURE OF BOVINE RHODOPSIN (DARK ADAPTED)
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

63-343 1jfpA 19%
[Model]

3c9l: STRUCTURE OF GROUND-STATE BOVINE RHODOSPIN IN A HEXAGONAL CRYSTAL FORM
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

55-343 3c9lA 19%
[Model]

1gzm: STRUCTURE OF BOVINE RHODOPSIN IN A TRIGONAL CRYSTAL FORM
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

55-343 1gzmA 19%
[Model]
55-343 1gzmB 19%
[Model]

2i35: CRYSTAL STRUCTURE OF RHOMBOHEDRAL CRYSTAL FORM OF GROUND- STATE RHODOPSIN
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

55-343 2i35A 19%
[Model]

3c9m: STRUCTURE OF A MUTANT BOVINE RHODOPSIN IN HEXAGONAL CRYSTAFORM
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-343 3c9mA 19%
[Model]

3vg9: CRYSTAL STRUCTURE OF HUMAN ADENOSINE A2A RECEPTOR WITH AN INVERSE-AGONIST ANTIBODY AT 2.7 A RESOLUTION
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

61-347 3vg9A 19%
[Model]

1ln6: STRUCTURE OF BOVINE RHODOPSIN (METARHODOPSIN II)
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

63-343 1ln6A 19%
[Model]

2x72: CRYSTAL STRUCTURE OF THE CONSTITUTIVELY ACTIVE E113Q,N2C, RHODOPSIN MUTANT WITH BOUND GALPHACT PEPTIDE.
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-343 2x72A 19%
[Model]

4a4m: CRYSTAL STRUCTURE OF THE LIGHT-ACTIVATED CONSTITUTIVELY ACN2C,M257Y,D282C RHODOPSIN MUTANT IN COMPLEX WITH A PEPTIDRESEMBLING THE C-TERMINUS OF THE GALPHA-PROTEIN SUBUNIT (
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

55-343 4a4mA 19%
[Model]

3vga: CRYSTAL STRUCTURE OF HUMAN ADENOSINE A2A RECEPTOR WITH AN INVERSE-AGONIST ANTIBODY AT 3.1 A RESOLUTION
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

61-345 3vgaA 19%
[Model]

2ped: CRYSTALLOGRAPHIC MODEL OF 9-CIS-RHODOPSIN
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 2pedA 18%
[Model]
56-343 2pedB 18%
[Model]

2i37: CRYSTAL STRUCTURE OF A PHOTOACTIVATED RHODOPSIN
Solved by: X-RAY, Resolution: 4.15A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

58-337 2i37A 19%
[Model]
56-343 2i37B 18%
[Model]
56-352 2i37C 18%
[Model]

3cap: CRYSTAL STRUCTURE OF NATIVE OPSIN: THE G PROTEIN-COUPLED RECEPTOR RHODOPSIN IN ITS LIGAND-FREE STATE
Solved by: X-RAY, Resolution: 4.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 3capB 18%
[Model]
56-343 3capA 18%
[Model]

1f88: CRYSTAL STRUCTURE OF BOVINE RHODOPSIN
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

55-342 1f88A 19%
[Model]
57-343 1f88B 18%
[Model]

2j4y: CRYSTAL STRUCTURE OF A RHODOPSIN STABILIZING MUTANT EXPRESSED IN MAMMALIAN CELLS
Solved by: X-RAY, Resolution: 3.4A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

55-343 2j4yA 18%
[Model]
55-343 2j4yB 18%
[Model]

2i36: CRYSTAL STRUCTURE OF TRIGONAL CRYSTAL FORM OF GROUND-STATERHODOPSIN
Solved by: X-RAY, Resolution: 4.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 2i36A 18%
[Model]
57-342 2i36B 18%
[Model]
56-341 2i36C 19%
[Model]

3pxo: CRYSTAL STRUCTURE OF METARHODOPSIN II
Solved by: X-RAY, Resolution: 4.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 3pxoA 18%
[Model]

1l9h: CRYSTAL STRUCTURE OF BOVINE RHODOPSIN AT 2.6 ANGSTROMS RESOLUTION
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

55-343 1l9hA 19%
[Model]
57-343 1l9hB 18%
[Model]

4bey: NIGHT BLINDNESS CAUSING G90D RHODOPSIN IN COMPLEX WITH GACT2 PEPTIDE
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 4beyA 18%
[Model]

3oax: CRYSTAL STRUCTURE OF BOVINE RHODOPSIN WITH BETA-IONONE
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 3oaxA 18%
[Model]
56-343 3oaxB 18%
[Model]

4bez: NIGHT BLINDNESS CAUSING G90D RHODOPSIN IN THE ACTIVE CONFO
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 4bezA 18%
[Model]

1u19: CRYSTAL STRUCTURE OF BOVINE RHODOPSIN AT 2.2 ANGSTROMS RESOLUTION
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 1u19B 18%
[Model]
56-343 1u19A 18%
[Model]

1hzx: CRYSTAL STRUCTURE OF BOVINE RHODOPSIN
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

55-343 1hzxA 19%
[Model]
57-343 1hzxB 18%
[Model]

4ej4: STRUCTURE OF THE DELTA OPIOID RECEPTOR BOUND TO NALTRINDOL
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-335 4ej4A 18%
[Model]

4j4q: CRYSTAL STRUCTURE OF ACTIVE CONFORMATION OF GPCR OPSIN STAOCTYLGLUCOSIDE
Solved by: X-RAY, Resolution: 4.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 4j4qA 18%
[Model]

3dqb: CRYSTAL STRUCTURE OF THE ACTIVE G-PROTEIN-COUPLED RECEPTOROPSIN IN COMPLEX WITH A C-TERMINAL PEPTIDE DERIVED FROM THE GALPHA SUBUNIT OF TRANSDUCIN
Solved by: X-RAY, Resolution: 4.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 3dqbA 18%
[Model]

2g87: CRYSTALLOGRAPHIC MODEL OF BATHORHODOPSIN
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 2g87A 18%
[Model]
56-343 2g87B 18%
[Model]

2hpy: CRYSTALLOGRAPHIC MODEL OF LUMIRHODOPSIN
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 2hpyB 18%
[Model]
56-343 2hpyA 18%
[Model]

3pqr: CRYSTAL STRUCTURE OF METARHODOPSIN II IN COMPLEX WITH A C-PEPTIDE DERIVED FROM THE GALPHA SUBUNIT OF TRANSDUCIN
Solved by: X-RAY, Resolution: 4.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-343 3pqrA 18%
[Model]

2r4r: CRYSTAL STRUCTURE OF THE HUMAN BETA2 ADRENOCEPTOR
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

63-344 2r4rA 17%
[Model]

2r4s: CRYSTAL STRUCTURE OF THE HUMAN BETA2 ADRENOCEPTOR
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

63-344 2r4sA 17%
[Model]

4djh: STRUCTURE OF THE HUMAN KAPPA OPIOID RECEPTOR IN COMPLEX WI
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-341 4djhA 17%
[Model]
57-341 4djhB 17%
[Model]

3kj6: CRYSTAL STRUCTURE OF A METHYLATED BETA2 ADRENERGIC RECEPTOFAB COMPLEX
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

61-343 3kj6A 17%
[Model]

3vw7: CRYSTAL STRUCTURE OF HUMAN PROTEASE-ACTIVATED RECEPTOR 1 (WITH ANTAGONIST VORAPAXAR AT 2.2 ANGSTROM
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

56-332 3vw7A 16%
[Model]

4dkl: CRYSTAL STRUCTURE OF THE MU-OPIOID RECEPTOR BOUND TO A MORANTAGONIST
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-341 4dklA 16%
[Model]

4grv: THE CRYSTAL STRUCTURE OF THE NEUROTENSIN RECEPTOR NTS1 IN NEUROTENSIN (8-13)
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-335 4grvA 16%
[Model]

4iaq: CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN OF 5-HT1B-BRIL IWITH DIHYDROERGOTAMINE (PSI COMMUNITY TARGET, E. XU)
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

58-344 4iaqA 15%
[Model]

4ib4: CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN OF 5-HT2B-BRIL IWITH ERGOTAMINE
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

60-344 4ib4A 15%
[Model]

4eiy: CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN OF A2AAR-BRIL INWITH ZM241385 AT 1.8A RESOLUTION
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-344 4eiyA 15%
[Model]

4iar: CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN OF 5-HT1B-BRIL IWITH ERGOTAMINE (PSI COMMUNITY TARGET, E. XU)
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

58-344 4iarA 15%
[Model]

3pbl: STRUCTURE OF THE HUMAN DOPAMINE D3 RECEPTOR IN COMPLEX WITETICLOPRIDE
Solved by: X-RAY, Resolution: 2.89A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

62-343 3pblA 16%
[Model]
62-343 3pblB 15%
[Model]

4daj: STRUCTURE OF THE M3 MUSCARINIC ACETYLCHOLINE RECEPTOR
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

58-338 4dajA 14%
[Model]
58-338 4dajB 14%
[Model]
58-338 4dajC 14%
[Model]
59-341 4dajD 14%
[Model]

3qak: AGONIST BOUND STRUCTURE OF THE HUMAN ADENOSINE A2A RECEPTO
Solved by: X-RAY, Resolution: 2.71A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

58-345 3qakA 13%
[Model]

3uon: STRUCTURE OF THE HUMAN M2 MUSCARINIC ACETYLCHOLINE RECEPTOAN ANTAGONIST
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-341 3uonA 13%
[Model]

3eml: THE 2.6 A CRYSTAL STRUCTURE OF A HUMAN A2A ADENOSINE RECEPTOR BOUND TO ZM241385.
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

59-348 3emlA 13%
[Model]

3rze: STRUCTURE OF THE HUMAN HISTAMINE H1 RECEPTOR IN COMPLEX WI
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

61-342 3rzeA 13%
[Model]

3v2w: CRYSTAL STRUCTURE OF A LIPID G PROTEIN-COUPLED RECEPTOR AT
Solved by: X-RAY, Resolution: 3.35A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

31-340 3v2wA 11%
[Model]

4l6r: STRUCTURE OF THE CLASS B HUMAN GLUCAGON G PROTEIN COUPLED
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

59-345 4l6rA 11%
[Model]

4k5y: CRYSTAL STRUCTURE OF HUMAN CORTICOTROPIN-RELEASING FACTOR (CRF1R) IN COMPLEX WITH THE ANTAGONIST CP-376395
Solved by: X-RAY, Resolution: 2.98A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

64-195 4k5yC 10%
[Model]

3v2y: CRYSTAL STRUCTURE OF A LIPID G PROTEIN-COUPLED RECEPTOR AT
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-343 3v2yA 10%
[Model]

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.