SWISS-MODEL Repository - Model Details

Model Overview
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1
378

Sequence
UniProt P51537
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
IDO

Model 3D Structure
Model information:
Modelled residue range: 7 to 376
Based on template: [ 2d0t ]  
Sequence Identity [%]: 32%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    7        SKYHVSK DIGFLLEPLQ DVLPDYFEPW NRLAKSLPEL VASHKFRDAV
2d0tA     12    s--keyhide evgfalpnpq enlpdfyndw mfiakhlpdl iesgqlrerv
                                                                      
TARGET                                       hhh hhhh   hhh hh   hhhhh
2d0tA                                        hhh hhhh   hhh h   hhhhhh


TARGET    54    KEMPLLDQSK LAGYRQKRLA HLQLVLITSG YLWQEGEGGA VQRLPECVSK
2d0tA     60    eklnmlsidh ltdhksqrla rlvlgcitma yvwgkghgdv rkvlprniav
                                                                      
TARGET          hh            hhhhhhh hhhhhhhhhh hhh         sss    hh
2d0tA           h             hhhhhhh hhhhhhhhhh hhh         sss    hh


TARGET    104   PLWNVSNDLG LKPVLTFADI CLTNCKVKNG -------DIE VMYNLPGGAG
2d0tA     110   pycqlskkle lppilvyadc vlanwkkkdp nkpltyenmd vlfsfrdgdc
                                                                      
TARGET          hhhhhhhhh        hhhh                                 
2d0tA           hhhhhhhhh        hhhh      sss          sss           


TARGET    147   TEWFLKVCGL VELAFGKSGQ AIQNVLDGAK ANDKAKMASG FTDLTAAIGN
2d0tA     160   skgfflvsll veiaaasaik viptvfkamq mqerdtllka lleiasclek
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhh    hhhhhhh    hhhhhhhh hhhhhhhhhh
2d0tA           hhhhhhhhhh hhhhhhhh    hhhhhhhh    hhhhhhhh hhhhhhhhhh


TARGET    197   MQTALARMNE NLTPEHFYNG VRPFLNGFGG PASPISGGLV YEGVSDKPVT
2d0tA     210   alqvfhqihd hvnpkaffsv lriylsgwkg n-pqlsdglv yegfwedpke
                                                                      
TARGET          hhhhhhhhhh    hhhhhhh hhhhh               s ss        
2d0tA           hhhhhhhhhh    hhhhhhh hhhh                s ss        


TARGET    247   MIGGSAAQSS TMQVLDGLLG ITHS---PEK QAFLDEIRNY MPPSHKQMLA
2d0tA     259   faggsagqss vfqcfdvllg iqqtagggha aqflqdmrry mppahrnflc
                                                                      
TARGET                     hhhhhh                 hhhhhhhh    hhhhhhhh
2d0tA                      hhhhhhhhh          hh hhhhhhhhh    hhhhhhhh


TARGET    294   DLTNMPRKVP QVVAETKDAN LTKAFNGCVA AFVQYRSYHI QVVTKYIVTA
2d0tA     309   slesnps-vr efvlskgdag lreaydacvk alvslrsyhl qivtkyilip
                                                                      
TARGET          hhh        hhhh    hh hhhhhhhhhh hhhhhhhhhh hhhhh   hh
2d0tA           hhh     hh hhhh    hh hhhhhhhhhh hhhhhhhhhh hhhh   hhh


TARGET    344   SKSDSPKSLA YKDTGKSDLI PFLKEVRDDT EKV ----             
2d0tA     358   as-------- ---qggtdlm nflktvrstt eksllkeg             
                                                                      
TARGET          h    hhhhh hhh    hhh hhhhhhhhhh hh                   
2d0tA           h                 hhh hhhhhhhhhh hh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 36546c4f8cad8f0aa9a5b66bf46a7a65 on BC2-cluster at Sun Aug 31 07:10:57 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>36546c4f8cad8f0aa9a5b66bf46a7a65
****************************************************************************
>2d0tA Evalue:0 SeqID:32.632 Method:HHSEARCH Type:MODEL
-********************************************************************--****-


TEMPLATE ID    START          STOP           METHOD         STATUS         
2d0tA          7              376            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 36546c4f8cad8f0aa9a5b66bf46a7a65 on gopt-70.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 07:14:13 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.