SWISS-MODEL Repository - Model Details

Model Overview
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1
218

Sequence
UniProt P52056
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Ala_racemase_N

Model 3D Structure
Model information:
Modelled residue range: 15 to 214
Based on template: [ 3cpg ]  
Sequence Identity [%]: 34%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    15                                            PPS VRLVAVTKTK
3cpgA     10    knlanevidd arareitdgv hrvldriaaa eeqagreags vrllaatktr
                                                                      
TARGET                                                       ssssss   
3cpgA                    h hhhhhhhhhh hhhhhhhhhh hhhh        ssssss   


TARGET    28    AIADIEAAYG AGIRDFAESR IQEALPKIEA LANYQ----- --------DI
3cpgA     60    digeixaaid agvrxigenr pqevtakaeg larrcaergf slgvaaaehi
                                                                      
TARGET           hhhhhhhhh h   ssss   hhhhhhhhhh hhhh                 
3cpgA            hhhhhhhhh h   ssss   hhhhhhhhhh hhhhhhhh   sss    sss


TARGET    65    NWHFIGRLQS NKARKVVENF TYIHSVDNLA IAVKLDRIAE ELNKFPQGLL
3cpgA     116   pfhligqlqs nkigkvlpvv dtiesvdsid laekisrrav argitvgvll
                                                                      
TARGET            sss         hhhh    sss     hh hhhhhhhhhh hh   sssss
3cpgA           sssss         hhhh    sss     hh hhhhhhhhhh hh   sssss


TARGET    115   QIKLLPDENK SGWTREELKL DLPQLELLKN LKICGLMTIL PLGLSPGDRQ
3cpgA     166   evnesgeesk sgcdpahair iaqkigtldg ielqglxtig ahvhdetvir
                                                                      
TARGET          ss             h   hh hhhhhh   s ssssssss        hhhhh
3cpgA           ss             h   hh hhhhhh   s ssssssss        hhhhh


TARGET    165   LTFGELKNLA TAINQQSS-- -LSLTELSMG MSGDYPEAIA AGATMIRLGT
3cpgA     216   rgfshlrktr dlilasgepg tdrcrelsxg xtgdxelaia egstivrvgt
                                                                      
TARGET          hhhhhhhhhh hhhhh           sss       hhhhhh h  sssss h
3cpgA           hhhhhhhhhh hhhhh           sss       hhhhhh h  sssss  


TARGET    212   ILF                                                   
3cpgA     266   aif-                                                  
                                                                      
TARGET          hhh                                                   
3cpgA

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: e60f76f95ffa9b8e20bb30476382c209 on BC2-cluster at Wed Sep  3 16:37:02 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>e60f76f95ffa9b8e20bb30476382c209
*************************************************************************
>3cpgA Evalue:1.3E-35 SeqID:34.259 Method:HHSEARCH Type:MODEL
-----******************************************************************--


TEMPLATE ID    START          STOP           METHOD         STATUS         
3cpgA          15             214            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: e60f76f95ffa9b8e20bb30476382c209 on gopt-66.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 16:38:48 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.