SWISS-MODEL Repository - Model Details

Model Overview
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1
377

Sequence
UniProt P52328
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Sigma70_r1_2
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4

Model 3D Structure
Model information:
Modelled residue range: 138 to 377
Based on template: [ 2be5 ]  
Sequence Identity [%]: 68%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

                                                       
2be5F     74    kistsdpvrq ylheigqvpl ltleeevela rkveegmeai kklseitgld
                                                                      
                                                       
2be5F              hhhhhhh hhhhhhh      hhhhhhhh hhhhhhhhhh hhhhhhh   


                                                       
2be5F     124   pdlirevvra kilgsarvrh ipglketldp ktveeidqkl kslpkehkry
                                                                      
                                                       
2be5F           hhhhhhhhhh hhh   hhhh h        h hhhhhhhhhh h   hhhhhh


TARGET    138            E EAKRRLAEAN LRLVVSIAKR YVGRGMLFLD LIQEGNMGLI
2be5F     174   lhiareg--e aarqhliean lrlvvsiakk ytgrglsfld liqegnqgli
                                                                      
TARGET                     hhhhhhhh    hhhhhhhh         hhh hhhhhhhhhh
2be5F           hhhhhhh  h hhhhhhhh    hhhhhhhh         hhh hhhhhhhhhh


TARGET    179   KAVEKFDHNK GFKFSTYATW WIRQAITRAI ADQARTIRIP VHMVETINKL
2be5F     222   ravekfeykr rfkfstyatw wirqainrai adqartirip vhmvetinkl
                                                                      
TARGET          hhh            hhhhhh hhhhhhhhhh hh         hhhhhhhhhh
2be5F           hhhhh          hhhhhh hhhhhhhhhh hh         hhhhhhhhhh


TARGET    229   IRVSRQLLQE LGREPTPEEI AAEME--LSV EKVREIMKIA QEPVSLETPI
2be5F     272   srtarqlqqe lgreptyeei aeamgpgwda krveetlkia qepvsletpi
                                                                      
TARGET          hhhhhhhh           hh h            hhhhhhhh           
2be5F           hhhhhhhh           hh hhhh     h hhhhhhhhh            


TARGET    277   GEEDDSHLGD FIEDQEALTP ADAAAYELLK EQLEDVLDTL TEREENVLRL
2be5F     322   gdekdsfygd fipdehlpsp vdaatqslls eelekalskl sereamvlkl
                                                                      
TARGET                                hhhhhhhhhh hhhhhhhh     hhhhhhhh
2be5F                   hh            hhhhhhhhhh hhhhhhhh     hhhhhhhh


TARGET    327   RFGLDDGRTR TLEEVGKVFG VTRERIRQIE AKALRKLRHP -SRSKRLKDF
2be5F     372   rkglidg--- --eevgaffg vtrerirqie nkalrklkyh esrtrklrdf
                                                                      
TARGET          hh            hhh        hhhhhhh hhhhhhhh             
2be5F           hhh           hhh        hhhhhhh hhhhhhhhhh hhh       


TARGET    376   LE                                                    
2be5F     422   ld-                                                   
                                                                      
TARGET                                                                
2be5F

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 1982ae68eec507e70dfa4dc29db0ebed on BC2-cluster at Sun Aug 31 18:58:13 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>1982ae68eec507e70dfa4dc29db0ebed
****************************************************************************
>2be5F Evalue:5.19244e-77 SeqID:68.313 Method:BLAST Type:MODEL
---------------------------****************************************-********
>1sigA Evalue:1.8E-44 SeqID:51.786 Method:HHSEARCH Type:MODEL
---------------------*********************----------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2be5F          138            377            BLAST          BUILT          
1sigA          106            211            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 1982ae68eec507e70dfa4dc29db0ebed on gopt-64.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 19:01:28 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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