SWISS-MODEL Repository - Model Details

Model Overview
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1
372

Sequence
UniProt P54918
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Ala_racemase_C
Ala_racemase_N

Model 3D Structure
Model information:
Modelled residue range: 3 to 372
Based on template: [ 1bd0 ]  
Sequence Identity [%]: 37%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    3          RQRAW VEIDQAALVH NVRQFRQYVG PKTNLMAVVK ADAYGHGAVR
1bd0A     2     ndf--hrdtw aevdldaiyd nvenlrrllp ddthimavvk anayghgdvq
                                                                      
TARGET                 sss ssssshhhhh hhhhhhhh      ssssss         hhh
1bd0A                  sss ssssshhhhh hhhhhhhh      ssssss         hhh


TARGET    48    VAQTALQAGA DWLAIATLGE GIELREAGIT APILLLGGIN SPEEIEAIAH
1bd0A     50    vartaleaga srlavaflde alalrekgie apilvlgas- rpadaalaaq
                                                                      
TARGET          hhhhhhhh    ssss   hh hhhhhhh     sssss         hhhhhh
1bd0A           hhhhhhhh    ssss   hh hhhhhhh     sssss          hhhhh


TARGET    98    WRLQPTLCSP EQAQLFNDIL LKLGKVLPVH LKLDTGMTRL GTPWPQ-AAN
1bd0A     99    qrialtvfrs dwleeasal- ysgpfpihfh lkmdtgmgrl gvkdeeetkr
                                                                      
TARGET          h  ssss    hhhhhhhhh        ssss sss                 h
1bd0A           h   sss    hhhhhhhhh        ssss sss            hhhhhh


TARGET    147   FVGLVQSLPQ LRLASLYSHL ATADDPNTAT MLQQQERFAK AIASLRQARL
1bd0A     148   ivalierhph fvleglythf atadevntdy fsyqytrflh mlewlps---
                                                                      
TARGET          hhhhhhh  s sssssss            hh hhhhhhhhhh hhh       
1bd0A           hhhhhhh  s sssssss            hh hhhhhhhhhh hhh       


TARGET    197   PIPKLHLANS AATLHGQAWH YDMVRVGLGL YGLYPAPHL- -GDCLDLKPV
1bd0A     195   rpplvhcans aaslrfpdrt fnmvrfgiam yglapspgik pllpyplkea
                                                                      
TARGET                   h hhhhh       sssss  hh                     s
1bd0A              sss   h hhhhh       sssss  hh            h        s


TARGET    245   LTVRAKITQI RTIPPGTGVS YGHQFVSEET MPMAVVGIGY ADGVPRNLSN
1bd0A     245   fslhsrlvhv kklqpgekvs ygatytaqte ewigtipigy adgwlrrlqh
                                                                      
TARGET          sssssss ss sss   ssss s sssss    ssssssssss           
1bd0A           sssssss ss sss   ssss s sssss    ssssssssss           


TARGET    295   QLEVLLRGQP VRQIGAITMD QMMVDLRGID DPQVGEVVTL IGQDGDRQIT
1bd0A     295   -fhvlvdgqk apivgricmd qcmirlp--g plpvgtkvtl igrqgdevis
                                                                      
TARGET           sssss  ss ssss   sss ssssss          sssss  sss  sss 
1bd0A            sssss  ss ssss   sss ssssss          sssss  sss  sss 


TARGET    345   ADHWASTLGT ISWEILCGFK HRLPRILI - ---------- -         
1bd0A     342   iddvarhlet inyevpctis yrvpriffrh krimevrnai g         
                                                                      
TARGET          hhhhhhhh     hhhhh       sssss                        
1bd0A           hhhhhhhh     hhhhh       ssssss   ssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: d84bcd237da335d4dca73a929e3838cf on BC2-cluster at Fri Aug 29 21:29:16 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>d84bcd237da335d4dca73a929e3838cf
***************************************************************************
>1bd0A Evalue:0 SeqID:37.534 Method:HHSEARCH Type:MODEL
***************************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1bd0A          3              372            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: d84bcd237da335d4dca73a929e3838cf on gopt-76.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 21:32:24 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.